在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 5 Reference Ions Near m/z 551.2939
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000006347 Reliable 551.2939 551.2938 ~ 551.2939
MzDiff: 0.2 ppm
Protoporphyrinogen IX (BioDeep_00000004563)
Formula: C34H40N4O4 (568.3049)
7.22 (100%) Rattus norvegicus
[UBERON:0004358] caput epididymis
MSI_000021187 Reliable 551.2939 551.2938 ~ 551.2939
MzDiff: 0.2 ppm
Protoporphyrinogen IX (BioDeep_00000004563)
Formula: C34H40N4O4 (568.3049)
3.32 (100%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000046515 Reliable 551.2978 551.2978 ~ 551.2978
MzDiff: none
Protoporphyrinogen IX (BioDeep_00000004563)
Formula: C34H40N4O4 (568.3049)
4.29 (100%) Mus musculus
[UBERON:0002107] liver
MSI_000051224 Unreliable 551.2959 551.2959 ~ 551.2959
MzDiff: none
Desglucocheirotoxin (BioDeep_00000000881)
Formula: C29H42O10 (550.2778)
0 (100%) Mytilus edulis
[UBERON:2001856] gill ray
MSI_000055681 Unreliable 551.3008 551.3008 ~ 551.3008
MzDiff: none
Presqualene diphosphate (BioDeep_00000005204)
Formula: C30H52O7P2 (586.3188)
1.04 (100%) Homo sapiens
[UBERON:0007779] transudate

Found 12 Sample Hits
Metabolite Species Sample
Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_18
Resolution: 17μm, 208x104

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_43
Resolution: 17μm, 298x106

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_44
Resolution: 17μm, 299x111

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_46
Resolution: 17μm, 298x106

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_47
Resolution: 17μm, 301x111

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_48
Resolution: 17μm, 294x107

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_04
Resolution: 17μm, 178x91

Description

Ergovaline

Formula: C29H35N5O5 (533.2638)
Adducts: [M+NH4]+ (Ppm: 6.8)
Rattus norvegicus (normal)
epik_dhb_head_ito01_05
Resolution: 17μm, 183x105

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_06
Resolution: 17μm, 183x103

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 14.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_14
Resolution: 17μm, 205x103

Description

Protoporphyrinogen IX

Formula: C34H40N4O4 (568.3049)
Adducts: [M+H-H2O]+ (Ppm: 7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Desglucocheirotoxin

Formula: C29H42O10 (550.2778)
Adducts: [M+H]+ (Ppm: 19.7)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell