在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 9 Reference Ions Near m/z 465.3411
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000057807 Reliable 465.3406 465.3401 ~ 465.3408
MzDiff: 3.1 ppm
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
4.23 (100%) DESI
[NOVOCELL:BACKGROUND] blank
MSI_000015921 Unreliable 465.3342 465.3342 ~ 465.3343
MzDiff: 0.2 ppm
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
3.01 (100%) Vitis vinifera
[PO:0009085] exocarp
MSI_000025465 Unreliable 465.333 465.333 ~ 465.333
MzDiff: 0.0 ppm
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
3.36 (100%) Mus musculus
[UBERON:0000913] interstitial fluid
MSI_000012903 Unavailable 465.3347 465.3347 ~ 465.3347
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
-0.52 (100%) Plant
[PO:0005020] vascular bundle
MSI_000014031 Unavailable 465.3347 465.3347 ~ 465.3347
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
-0.24 (100%) Plant
[PO:0005417] phloem
MSI_000015035 Unavailable 465.3347 465.3347 ~ 465.3347
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
-0.53 (100%) Plant
[PO:0006036] root epidermis
MSI_000018396 Unreliable 465.3347 465.3347 ~ 465.3347
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
1.78 (100%) Plant
[PO:0020124] root stele
MSI_000019849 Unavailable 465.3347 465.3347 ~ 465.3347
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
-0.48 (100%) Plant
[PO:0025197] stele
MSI_000037652 Unreliable 465.334 465.334 ~ 465.334
MzDiff: none
Glycocholic acid (BioDeep_00000000126)
Formula: C26H43NO6 (465.309)
0.54 (100%) Posidonia oceanica
[UBERON:0000329] hair root

Found 13 Sample Hits
Metabolite Species Sample
Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 18.3)
Homo sapiens (esophagus)
LNTO29_16_2
Resolution: 17μm, 95x101

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 3.5)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Demissidine

Formula: C28H48O5 (464.3502)
Adducts: [M+H]+ (Ppm: 17.7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

sphingosylphosphorylcholine

Formula: C23H49N2O5P (464.3379)
Adducts: [M+H]+ (Ppm: 0.8)
Homo sapiens (colorectal adenocarcinoma)
520TopL, 490TopR, 510BottomL, 500BottomR-profile
Resolution: 17μm, 147x131

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 16.8)
Homo sapiens (esophagus)
LNTO29_16_3
Resolution: 17μm, 108x107

Description

Adlupone

Formula: C31H46O4 (482.3396)
Adducts: [M+H-H2O]+ (Ppm: 7.3)
Homo sapiens (esophagus)
TO40T
Resolution: 17μm, 82x74

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 17.9)
Homo sapiens (esophagus)
TO31T
Resolution: 75μm, 56x54

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 19.6)
Homo sapiens (esophagus)
TO29T
Resolution: 75μm, 56x48

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 18.3)
Homo sapiens (esophagus)
LNTO30_8M_3
Resolution: 75μm, 69x54

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 18.9)
Homo sapiens (esophagus)
LNTO30_17_2
Resolution: 75μm, 82x54

Description

sphingosylphosphorylcholine

Formula: C23H49N2O5P (464.3379)
Adducts: [M+H]+ (Ppm: 7.5)
Homo sapiens (esophagus)
LNTO22_1_5
Resolution: 75μm, 135x94

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 18.3)
Homo sapiens (esophagus)
LNTO30_7_2
Resolution: 75μm, 82x68

Description

Glycocholic acid

Formula: C26H43NO6 (465.309)
Adducts: [M-H2O+NH4]+ (Ppm: 17.7)
Homo sapiens (colorectal adenocarcinoma)
120TopL, 90TopR, 110BottomL, 100BottomR-centroid
Resolution: 50μm, 132x136

Description