在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 10 Reference Ions Near m/z 161.0301
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000053659 Reliable 161.0205 161.0203 ~ 161.0208
MzDiff: 2.1 ppm
4-Hydroxybenzoic acid (BioDeep_00000000344)
Formula: C7H6O3 (138.0317)
6.14 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000012660 Unavailable 161.0213 161.0213 ~ 161.0213
MzDiff: none
Salicylic acid (BioDeep_00000000203)
Formula: C7H6O3 (138.0317)
-0.31 (100%) Plant
[PO:0005020] vascular bundle
MSI_000014202 Unavailable 161.0213 161.0213 ~ 161.0213
MzDiff: none
Salicylic acid (BioDeep_00000000203)
Formula: C7H6O3 (138.0317)
-0.39 (100%) Plant
[PO:0005417] phloem
MSI_000015048 Unavailable 161.0213 161.0213 ~ 161.0213
MzDiff: none
Salicylic acid (BioDeep_00000000203)
Formula: C7H6O3 (138.0317)
-0.54 (100%) Plant
[PO:0006036] root epidermis
MSI_000018373 Unreliable 161.0213 161.0213 ~ 161.0213
MzDiff: none
Salicylic acid (BioDeep_00000000203)
Formula: C7H6O3 (138.0317)
1.78 (100%) Plant
[PO:0020124] root stele
MSI_000020155 Unavailable 161.0213 161.0213 ~ 161.0213
MzDiff: none
Salicylic acid (BioDeep_00000000203)
Formula: C7H6O3 (138.0317)
-0.54 (100%) Plant
[PO:0025197] stele
MSI_000035557 Unavailable 161.0203 161.0203 ~ 161.0203
MzDiff: none
4-Hydroxybenzoic acid (BioDeep_00000000344)
Formula: C7H6O3 (138.0317)
-0.11 (100%) Posidonia oceanica
[PO:0006203] pericycle
MSI_000040446 Unavailable 161.0208 161.0208 ~ 161.0208
MzDiff: none
4-Hydroxybenzoic acid (BioDeep_00000000344)
Formula: C7H6O3 (138.0317)
-0.21 (100%) Posidonia oceanica
[PO:0005417] phloem
MSI_000043614 Unreliable 161.0204 161.0204 ~ 161.0204
MzDiff: none
4-Hydroxybenzoic acid (BioDeep_00000000344)
Formula: C7H6O3 (138.0317)
1.4 (100%) Homo sapiens
[UBERON:0001043] esophagus
MSI_000057365 Unreliable 161.0204 161.0204 ~ 161.0204
MzDiff: none
4-Hydroxybenzoic acid (BioDeep_00000000344)
Formula: C7H6O3 (138.0317)
1.08 (100%) Homo sapiens
[UBERON:0007779] transudate

Found 3 Sample Hits
Metabolite Species Sample
2,3-Dihydroxy-5-methylthio-4-pentenoic acid

Formula: C6H10O4S (178.03)
Adducts: [M+H-H2O]+ (Ppm: 16.7)
Homo sapiens (esophagus)
LNTO22_1_3
Resolution: 75μm, 121x68

Description

Urocanic acid

Formula: C6H6N2O2 (138.0429)
Adducts: [M+Na]+ (Ppm: 12.7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

2,3-Dihydroxy-5-methylthio-4-pentenoic acid

Formula: C6H10O4S (178.03)
Adducts: [M+H-H2O]+ (Ppm: 19.2)
Homo sapiens (esophagus)
LNTO30_7_2
Resolution: 75μm, 82x68

Description