在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 3 Reference Ions Near m/z 636.4113
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000010428 Unavailable 636.4044 636.4044 ~ 636.4044
MzDiff: 0.0 ppm
Madlongiside C (BioDeep_00000020109)
Formula: C35H56O10 (636.3873)
-1.41 (100%) Bathymodiolus
[UBERON:0009120] gill filament
MSI_000011978 Unavailable 636.4044 636.4044 ~ 636.4044
MzDiff: none
Madlongiside C (BioDeep_00000020109)
Formula: C35H56O10 (636.3873)
-0.7 (100%) Bathymodiolus
[UBERON:2000211] gill lamella
MSI_000057443 Unreliable 636.4073 636.4073 ~ 636.4073
MzDiff: none
Madlongiside C (BioDeep_00000020109)
Formula: C35H56O10 (636.3873)
0.99 (100%) Homo sapiens
[UBERON:0007779] transudate

Found 3 Sample Hits
Metabolite Species Sample
Madlongiside C

Formula: C35H56O10 (636.3873)
Adducts: [M-H2O+NH4]+ (Ppm: 1.1)
Marker Pen (NA)
3ul_0.8Mpa_RAW_20241016-PAPER PNMK
Resolution: 30μm, 315x42

Description

By writing the four English letters “PNMK” on white paper with a marker pen, and then scanning with a DESI ion source to obtain the scanning result. The signal of the chemical substances on the marker pen used appears on the channel with an m/z value of 322.1918, 323.1953, 546.4010, and etc, from the single cell deconvolution sampling layer class_4. This test data was tested by chuxiaoping from PANOMIX’s R&D laboratory.

Madlongiside C

Formula: C35H56O10 (636.3873)
Adducts: [M-H2O+NH4]+ (Ppm: 5.2)
Homo sapiens (esophagus)
LNTO22_1_4
Resolution: 17μm, 82x80

Description

3-O-cis-Coumaroylmaslinic acid

Formula: C39H54O6 (618.392)
Adducts: [M+NH4]+ (Ppm: 16.7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.