在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 4 Reference Ions Near m/z 574.3844
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000007947 Reliable 574.3867 574.3867 ~ 574.3868
MzDiff: 0.5 ppm
LysoPC(20:0/0:0) (BioDeep_00000031483)
Formula: C28H58NO7P (551.3951)
20.16 (100%) Rattus norvegicus
[UBERON:0004360] cauda epididymis
MSI_000008037 Reliable 574.3786 574.3785 ~ 574.3788
MzDiff: 1.3 ppm
Milbemycin D (BioDeep_00000180957)
Formula: C33H48O7 (556.34)
14.81 (100%) Rattus norvegicus
[UBERON:0004360] cauda epididymis
MSI_000008050 Reliable 574.3934 574.3933 ~ 574.3935
MzDiff: 0.9 ppm
Not Annotated 12.03 (0%) Rattus norvegicus
[UBERON:0004360] cauda epididymis
MSI_000051271 Unreliable 574.3844 574.3844 ~ 574.3844
MzDiff: none
LysoPC(20:0/0:0) (BioDeep_00000031483)
Formula: C28H58NO7P (551.3951)
0 (100%) Mytilus edulis
[UBERON:2001856] gill ray

Found 2 Sample Hits
Metabolite Species Sample
3-Benzoyloxy-6-oxo-12-ursen-28-oic acid

Formula: C37H50O5 (574.3658)
Adducts: [M-H2O+NH4]+ (Ppm: 17.2)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

LysoPC(20:0/0:0)

Formula: C28H58NO7P (551.3951)
Adducts: [M+Na]+ (Ppm: 0.2)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell