在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 10 Reference Ions Near m/z 480.3371
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000020473 Reliable 480.3452 480.3451 ~ 480.3453
MzDiff: 0.8 ppm
1-heneicosanoyl-glycero-3-phosphate (BioDeep_00000055004)
Formula: C24H49O7P (480.3216)
5.82 (100%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000063260 Reliable 480.3356 480.3355 ~ 480.3356
MzDiff: 0.3 ppm
Crustecdysone (BioDeep_00000002779)
Formula: C27H44O7 (480.3087)
4.19 (50%) Mus musculus
[UBERON:0000956] cerebral cortex
MSI_000010633 Unavailable 480.345 480.345 ~ 480.345
MzDiff: 0.1 ppm
LPlasCho (BioDeep_00000597761)
Formula: C24H50NO6P (479.3376)
-2.18 (100%) Bathymodiolus
[UBERON:0009120] gill filament
MSI_000011937 Unavailable 480.345 480.345 ~ 480.345
MzDiff: none
LPlasCho (BioDeep_00000597761)
Formula: C24H50NO6P (479.3376)
-0.49 (100%) Bathymodiolus
[UBERON:2000211] gill lamella
MSI_000024998 Unreliable 480.3371 480.3371 ~ 480.3371
MzDiff: none
N-[2-[5-[[3-(2-Aminoethyl)-1H-indol-5-yl]-methoxymethoxy]-1H-indol-3-yl]ethyl]-N-propan-2-ylpropan-2-amine (BioDeep_00000185430)
Formula: C28H38N4O2 (462.2995)
1.74 (100%) Mus musculus
[UBERON:0004269] upper arm connective tissue
MSI_000049719 Unreliable 480.3447 480.3447 ~ 480.3447
MzDiff: none
LPlasCho (BioDeep_00000597761)
Formula: C24H50NO6P (479.3376)
1.64 (100%) Mytilus edulis
[UBERON:0009120] gill filament
MSI_000051089 Unreliable 480.3447 480.3447 ~ 480.3447
MzDiff: none
LPlasCho (BioDeep_00000597761)
Formula: C24H50NO6P (479.3376)
0.06 (100%) Mytilus edulis
[UBERON:2001856] gill ray
MSI_000058501 Unreliable 480.3363 480.3363 ~ 480.3363
MzDiff: none
Crustecdysone (BioDeep_00000002779)
Formula: C27H44O7 (480.3087)
1.15 (100%) Mus musculus
[UBERON:0001950] neocortex
MSI_000059857 Unavailable 480.3363 480.3363 ~ 480.3363
MzDiff: none
Crustecdysone (BioDeep_00000002779)
Formula: C27H44O7 (480.3087)
-0.65 (100%) Mus musculus
[UBERON:0002298] brainstem
MSI_000060814 Unavailable 480.3363 480.3363 ~ 480.3363
MzDiff: none
Crustecdysone (BioDeep_00000002779)
Formula: C27H44O7 (480.3087)
-0.5 (100%) Mus musculus
[UBERON:0002421] hippocampal formation

Found 5 Sample Hits
Metabolite Species Sample
Crustecdysone

Formula: C27H44O7 (480.3087)
Adducts: [M-H2O+NH4]+ (Ppm: 7)
Mus musculus (Lung)
image1
Resolution: 40μm, 187x165

Description

Fig. 2 MALDI-MSI data from the same mouse lung tissue analyzed in Fig. 1. A: Optical image of the post-MSI, H&E-stained tissue section. B–D, F–G: Ion images of (B) m/z 796.6855 ([U13C-DPPC+Na]+), (C) m/z 756.5514 ([PC32:0+Na]+), (D) m/z 765.6079 ([D9-PC32:0+Na]+), (F) m/z 754.5359 ([PC32:1+Na]+), and (G) m/z 763.5923 ([D9-PC32:1+Na]+). E, H: Ratio images of (E) [D9-PC32:0+Na]+:[PC32:0+Na]+ and (H) [D9-PC32:1+Na]+:[PC32:1+Na]+. Part-per-million (ppm) mass errors are indicated in parentheses. All images were visualized using total-ion-current normalization and using hotspot removal (high quantile = 99%). DPPC = PC16:0/16:0. U13C-DPPC, universally 13C-labeled dipalmitoyl PC; PC, phosphatidylcholine; MSI, mass spectrometry imaging; H&E, hematoxylin and eosin. Fig 1-3, Fig S1-S3, S5

N-[2-[5-[[3-(2-Aminoethyl)-1H-indol-5-yl]-methoxymethoxy]-1H-indol-3-yl]ethyl]-N-propan-2-ylpropan-2-amine

Formula: C28H38N4O2 (462.2995)
Adducts: [M+NH4]+ (Ppm: 7.9)
Mus musculus (Left upper arm)
357_l_total ion count
Resolution: 50μm, 97x131

Description

Diseased

Crustecdysone

Formula: C27H44O7 (480.3087)
Adducts: [M-H2O+NH4]+ (Ppm: 0.7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Crustecdysone

Formula: C27H44O7 (480.3087)
Adducts: [M-H2O+NH4]+ (Ppm: 9.1)
Mus musculus (brain)
Brain01_Bregma-3-88b_centroid
Resolution: 17μm, 265x320

Description

Crustecdysone

Formula: C27H44O7 (480.3087)
Adducts: [M-H2O+NH4]+ (Ppm: 7.6)
Mus musculus (brain)
Brain02_Bregma1-42_03
Resolution: 17μm, 483x403

Description