M/Z: 478.3166


Hit 2 annotations:  Gentamicin_[M+H]+; Maraviroc_[M+H-2H2O]+


在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 5 Reference Ions Near m/z 478.3166
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000011612 Unavailable 478.32 478.32 ~ 478.32
MzDiff: none
Gentamicin (BioDeep_00000006570)
Formula: C21H43N5O7 (477.3162)
-1.44 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000009509 Unavailable 478.32 478.32 ~ 478.32
MzDiff: none
Gentamicin (BioDeep_00000006570)
Formula: C21H43N5O7 (477.3162)
-0.67 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000000525 Unavailable 478.32 478.32 ~ 478.32
MzDiff: none
Gentamicin (BioDeep_00000006570)
Formula: C21H43N5O7 (477.3162)
-0.36 (100%) Mus musculus
[CL:0000066] epithelial cell
MSI_000031023 Unreliable 478.3235 478.3235 ~ 478.3235
MzDiff: none
Gentamicin (BioDeep_00000006570)
Formula: C21H43N5O7 (477.3162)
0.26 (100%) Macropus giganteus
[UBERON:0003027] cingulate cortex
MSI_000031075 Unreliable 478.3235 478.3235 ~ 478.3235
MzDiff: none
Gentamicin (BioDeep_00000006570)
Formula: C21H43N5O7 (477.3162)
2.56 (100%) Macropus giganteus
[UBERON:0006093] precuneus cortex

Found 4 Sample Hits
Metabolite Species Sample
Gentamicin

Formula: C21H43N5O7 (477.3162)
Adducts: [M+H]+ (Ppm: 7.3)
Mus musculus (Urinary bladder)
HR2MSI_mouse_urinary_bladder - S096
Resolution: 10μm, 260x134

Description

Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset)
The spatial distribution of phospholipids in a tissue section of mouse urinary bladder was analyzed by MALDI MS imaging at 10 micrometer pixel size with high mass resolution (using an LTQ Orbitrap mass spectrometer).

R, ö, mpp A, Guenther S, Schober Y, Schulz O, Takats Z, Kummer W, Spengler B, Histology by mass spectrometry: label-free tissue characterization obtained from high-accuracy bioanalytical imaging. Angew Chem Int Ed Engl, 49(22):3834-8(2010)

Fig. S2: Single ion images of compounds shown in Fig. 1A-B : (upper left to lower right) m/z = 743.5482 (unknown), m/z = 741.5307 (SM (16:0), [M+K]+), m/z = 798.5410 (PC (34:1), [M+K]+), m/z = 616.1767 (heme b, M+), m/z = 772.5253 (PC (32:0), [M+K]+).

Stability of determined mass values was in the range of +/- 1 ppm over 22 hours of measurement (Fig. S4), with a standard deviation of 0.56 ppm. Accuracy data were obtained during tissue scanning experiments by monitoring the mass signal at nominal mass 798. The internal lock mass function of the Orbitrap instrument was used for automatic calibration during imaging measurements, using the known matrix-related ion signals at m/z = 137.0233, m/z = 444.0925 and m/z = 716.1246.

Gentamicin

Formula: C21H43N5O7 (477.3162)
Adducts: [M+H]+ (Ppm: 4.4)
Posidonia oceanica (root)
20190822_MS1_A19r-19
Resolution: 17μm, 303x309

Description

Seagrasses are among the most efficient sinks of carbon dioxide on Earth. While carbon sequestration in terrestrial plants is linked to the microorganisms living in their soils, the interactions of seagrasses with their rhizospheres are poorly understood. Here, we show that the seagrass, Posidonia oceanica excretes sugars, mainly sucrose, into its rhizosphere. These sugars accumulate to µM concentrations—nearly 80 times higher than previously observed in marine environments. This finding is unexpected as sugars are readily consumed by microorganisms. Our experiments indicated that under low oxygen conditions, phenolic compounds from P. oceanica inhibited microbial consumption of sucrose. Analyses of the rhizosphere community revealed that many microbes had the genes for degrading sucrose but these were only expressed by a few taxa that also expressed genes for degrading phenolics. Given that we observed high sucrose concentrations underneath three other species of marine plants, we predict that the presence of plant-produced phenolics under low oxygen conditions allows the accumulation of labile molecules across aquatic rhizospheres.

Gentamicin

Formula: C21H43N5O7 (477.3162)
Adducts: [M+H]+ (Ppm: 11.9)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Maraviroc

Formula: C29H41F2N5O (513.3279)
Adducts: [M+H-2H2O]+ (Ppm: 5.3)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell