在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 9 Reference Ions Near m/z 400.2862
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000020310 Reliable 400.2783 400.2781 ~ 400.2786
MzDiff: 2.3 ppm
Apo-12'-violaxanthal (BioDeep_00000019585)
Formula: C25H34O3 (382.2508)
5.61 (100%) Rattus norvegicus
[UBERON:0004358] caput epididymis
MSI_000006442 Reliable 400.2885 400.2883 ~ 400.2888
MzDiff: 2.2 ppm
N-Linoleoyl Histidine (BioDeep_00000171256)
Formula: C24H39N3O3 (417.2991)
6.6 (100%) Rattus norvegicus
[UBERON:0004358] caput epididymis
MSI_000007127 Unreliable 400.2775 400.2773 ~ 400.2778
MzDiff: 2.2 ppm
(5Z)-13-Carboxytridec-5-enoylcarnitine (BioDeep_00000170071)
Formula: C21H37NO6 (399.2621)
4.51 (67%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000021178 Unreliable 400.2877 400.2876 ~ 400.2878
MzDiff: 0.7 ppm
Carbocromen (BioDeep_00000177006)
Formula: C20H27NO5 (361.1889)
3.43 (100%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000061294 Unreliable 400.2779 400.2778 ~ 400.278
MzDiff: 0.5 ppm
N-Docosahexaenoyl Alanine (BioDeep_00000171286)
Formula: C25H37NO3 (399.2773)
2.37 (100%) Mus musculus
[UBERON:0000956] cerebral cortex
MSI_000063219 Unreliable 400.286 400.286 ~ 400.286
MzDiff: none
Apo-12'-violaxanthal (BioDeep_00000019585)
Formula: C25H34O3 (382.2508)
1.57 (100%) Mus musculus
[UBERON:0000956] cerebral cortex
MSI_000028473 Unreliable 400.2838 400.2838 ~ 400.2838
MzDiff: none
Apo-12'-violaxanthal (BioDeep_00000019585)
Formula: C25H34O3 (382.2508)
1.05 (100%) Macropus giganteus
[UBERON:0001891] midbrain
MSI_000030591 Unreliable 400.2838 400.2838 ~ 400.2838
MzDiff: none
Apo-12'-violaxanthal (BioDeep_00000019585)
Formula: C25H34O3 (382.2508)
1.48 (100%) Macropus giganteus
[UBERON:0003027] cingulate cortex
MSI_000062108 Unreliable 400.278 400.278 ~ 400.278
MzDiff: none
N-Docosahexaenoyl Alanine (BioDeep_00000171286)
Formula: C25H37NO3 (399.2773)
1 (100%) Mus musculus
[UBERON:0001950] neocortex

Found 12 Sample Hits
Metabolite Species Sample
N-Linoleoyl Histidine

Formula: C24H39N3O3 (417.2991)
Adducts: [M+H-H2O]+ (Ppm: 18.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_44
Resolution: 17μm, 299x111

Description

N-Linoleoyl Histidine

Formula: C24H39N3O3 (417.2991)
Adducts: [M+H-H2O]+ (Ppm: 17.6)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_46
Resolution: 17μm, 298x106

Description

N-Linoleoyl Histidine

Formula: C24H39N3O3 (417.2991)
Adducts: [M+H-H2O]+ (Ppm: 16.6)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_47
Resolution: 17μm, 301x111

Description

N-Linoleoyl Histidine

Formula: C24H39N3O3 (417.2991)
Adducts: [M+H-H2O]+ (Ppm: 18.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_48
Resolution: 17μm, 294x107

Description

Carbocromen

Formula: C20H27NO5 (361.1889)
Adducts: [M+K]+ (Ppm: 2.3)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_04
Resolution: 17μm, 178x91

Description

Carbocromen

Formula: C20H27NO5 (361.1889)
Adducts: [M+K]+ (Ppm: 2.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_03
Resolution: 17μm, 159x110

Description

Apo-12'-violaxanthal

Formula: C25H34O3 (382.2508)
Adducts: [M+NH4]+ (Ppm: 0.7)
Rattus norvegicus (normal)
epik_dhb_head_ito01_05
Resolution: 17μm, 183x105

Description

Carbocromen

Formula: C20H27NO5 (361.1889)
Adducts: [M+K]+ (Ppm: 2.1)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_06
Resolution: 17μm, 183x103

Description

Apo-12'-violaxanthal

Formula: C25H34O3 (382.2508)
Adducts: [M+NH4]+ (Ppm: 14.5)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Apo-12'-violaxanthal

Formula: C25H34O3 (382.2508)
Adducts: [M+NH4]+ (Ppm: 4)
Mus musculus (brain)
Brain02_Bregma1-42_03
Resolution: 17μm, 483x403

Description

Apo-12'-violaxanthal

Formula: C25H34O3 (382.2508)
Adducts: [M+NH4]+ (Ppm: 3.5)
Mus musculus (brain)
Brain02_Bregma-3-88
Resolution: 17μm, 288x282

Description

Apo-12'-violaxanthal

Formula: C25H34O3 (382.2508)
Adducts: [M+NH4]+ (Ppm: 3.7)
Mus musculus (brain)
Brain02_Bregma-1-46
Resolution: 17μm, 294x399

Description