在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 17 Reference Ions Near m/z 344.9946
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000046215 Reliable 344.9999 344.9999 ~ 344.9999
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
5.58 (100%) Mus musculus
[UBERON:0002107] liver
MSI_000041041 Reliable 345.0004 345.0001 ~ 345.0006
MzDiff: 2.1 ppm
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
1.6 (71%) Posidonia oceanica
[PO:0006036] root epidermis
MSI_000016475 Unreliable 345.0008 345.0008 ~ 345.0009
MzDiff: 0.3 ppm
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
0.87 (50%) Vitis vinifera
[PO:0009086] endocarp
MSI_000012864 Unavailable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
-0.5 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013225 Unavailable 344.9885 344.9885 ~ 344.9885
MzDiff: none
Lumogallion (BioDeep_00000180567)
Formula: C12H9ClN2O6S (343.987)
-0.86 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013864 Unreliable 344.9885 344.9885 ~ 344.9885
MzDiff: none
Lumogallion (BioDeep_00000180567)
Formula: C12H9ClN2O6S (343.987)
0 (100%) Plant
[PO:0005417] phloem
MSI_000013967 Unavailable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
-0.15 (100%) Plant
[PO:0005417] phloem
MSI_000014578 Unreliable 344.9885 344.9885 ~ 344.9885
MzDiff: none
Lumogallion (BioDeep_00000180567)
Formula: C12H9ClN2O6S (343.987)
0.49 (100%) Plant
[PO:0006036] root epidermis
MSI_000015109 Unavailable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
-0.57 (100%) Plant
[PO:0006036] root epidermis
MSI_000018459 Unreliable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
1.76 (100%) Plant
[PO:0020124] root stele
MSI_000019166 Unavailable 344.9885 344.9885 ~ 344.9885
MzDiff: none
Lumogallion (BioDeep_00000180567)
Formula: C12H9ClN2O6S (343.987)
-1.03 (100%) Plant
[PO:0020124] root stele
MSI_000019219 Unreliable 344.9885 344.9885 ~ 344.9885
MzDiff: none
Lumogallion (BioDeep_00000180567)
Formula: C12H9ClN2O6S (343.987)
1.4 (100%) Plant
[PO:0025197] stele
MSI_000020198 Unavailable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
-0.54 (100%) Plant
[PO:0025197] stele
MSI_000033753 Unreliable 345.0001 345.0001 ~ 345.0001
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
0.71 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000035261 Unreliable 345.0001 345.0001 ~ 345.0001
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
0.76 (100%) Posidonia oceanica
[PO:0006203] pericycle
MSI_000037188 Unreliable 345.0005 345.0005 ~ 345.0005
MzDiff: none
Chloramphenicol (BioDeep_00000001796)
Formula: C11H12Cl2N2O5 (322.0123)
2.02 (100%) Posidonia oceanica
[UBERON:0000329] hair root
MSI_000039873 Unreliable 345.0006 345.0006 ~ 345.0006
MzDiff: none
Hispidulin 7-sulfate (BioDeep_00000269715)
Formula: C16H12O9S (380.0202)
0.77 (100%) Posidonia oceanica
[PO:0005417] phloem

Found 4 Sample Hits
Metabolite Species Sample
Hispidulin 7-sulfate

Formula: C16H12O9S (380.0202)
Adducts: [M+H-2H2O]+ (Ppm: 16.1)
Vitis vinifera (Fruit)
grape_dhb_164_1
Resolution: 17μm, 136x122

Description

Grape berries fruit, condition: Late

Hispidulin 7-sulfate

Formula: C16H12O9S (380.0202)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

Chloramphenicol

Formula: C11H12Cl2N2O5 (322.0123)
Adducts: [M+Na]+ (Ppm: 4.8)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Lumogallion

Formula: C12H9ClN2O6S (343.987)
Adducts: [M+H]+ (Ppm: 1)
Homo sapiens (esophagus)
LNTO22_1_5
Resolution: 75μm, 135x94

Description