在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 8 Reference Ions Near m/z 288.066
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000017502 Reliable 288.0562 288.0561 ~ 288.0563
MzDiff: 0.7 ppm
Orotidine (BioDeep_00000017895)
Formula: C10H12N2O8 (288.0594)
2.2 (100%) Vitis vinifera
[PO:0009087] mesocarp
MSI_000053956 Unreliable 288.0591 288.0591 ~ 288.0591
MzDiff: 0.3 ppm
Cyanidin (BioDeep_00000003884)
Formula: [C15H11O6]+ (287.0556)
3.77 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000012460 Unreliable 288.0585 288.0585 ~ 288.0585
MzDiff: none
Sulfamethizole (BioDeep_00000001824)
Formula: C9H10N4O2S2 (270.0245)
0.68 (100%) Plant
[PO:0005020] vascular bundle
MSI_000018781 Unreliable 288.0585 288.0585 ~ 288.0585
MzDiff: none
Sulfamethizole (BioDeep_00000001824)
Formula: C9H10N4O2S2 (270.0245)
1.43 (100%) Plant
[PO:0020124] root stele
MSI_000033590 Unreliable 288.0583 288.0583 ~ 288.0583
MzDiff: none
Cyanidin (BioDeep_00000003884)
Formula: [C15H11O6]+ (287.0556)
1.53 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000035484 Unreliable 288.0583 288.0583 ~ 288.0583
MzDiff: none
Cyanidin (BioDeep_00000003884)
Formula: [C15H11O6]+ (287.0556)
0.04 (100%) Posidonia oceanica
[PO:0006203] pericycle
MSI_000037224 Unreliable 288.0582 288.0582 ~ 288.0582
MzDiff: none
Cyanidin (BioDeep_00000003884)
Formula: [C15H11O6]+ (287.0556)
2 (100%) Posidonia oceanica
[UBERON:0000329] hair root
MSI_000039949 Unreliable 288.0591 288.0591 ~ 288.0591
MzDiff: none
Cyanidin (BioDeep_00000003884)
Formula: [C15H11O6]+ (287.0556)
0.37 (100%) Posidonia oceanica
[PO:0005417] phloem

Found 8 Sample Hits
Metabolite Species Sample
Orotidine

Formula: C10H12N2O8 (288.0594)
Adducts: [M]+ (Ppm: 8.7)
Vitis vinifera (Fruit)
grape_dhb_91_1
Resolution: 50μm, 120x114

Description

Grape berries fruit, condition: Ripe

Cyanidin

Formula: [C15H11O6]+ (287.0556)
Adducts: [M+H]+ (Ppm: 13)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

Sertraline

Formula: C17H17Cl2N (305.0738)
Adducts: [M+H-H2O]+ (Ppm: 13.9)
Homo sapiens (esophagus)
LNTO22_1_3
Resolution: 75μm, 121x68

Description

Sertraline

Formula: C17H17Cl2N (305.0738)
Adducts: [M+H-H2O]+ (Ppm: 14.5)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Sulfamethizole

Formula: C9H10N4O2S2 (270.0245)
Adducts: [M+NH4]+ (Ppm: 17.9)
Homo sapiens (colorectal adenocarcinoma)
80TopL, 50TopR, 70BottomL, 60BottomR-profile
Resolution: 17μm, 137x136

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Sertraline

Formula: C17H17Cl2N (305.0738)
Adducts: [M+H-H2O]+ (Ppm: 15)
Homo sapiens (esophagus)
LNTO30_7_2
Resolution: 75μm, 82x68

Description

Sertraline

Formula: C17H17Cl2N (305.0738)
Adducts: [M+H-H2O]+ (Ppm: 16)
Homo sapiens (colorectal adenocarcinoma)
240TopL, 210TopR, 230BottomL, 220BottomR-centroid
Resolution: 50μm, 142x141

Description

Sertraline

Formula: C17H17Cl2N (305.0738)
Adducts: [M+H-H2O]+ (Ppm: 15.7)
Homo sapiens (colorectal adenocarcinoma)
120TopL, 90TopR, 110BottomL, 100BottomR-centroid
Resolution: 50μm, 132x136

Description