在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 11 Reference Ions Near m/z 224.0279
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000053032 Reliable 224.0279 224.0275 ~ 224.028
MzDiff: 1.8 ppm
Glucosamine 6-phosphate (BioDeep_00000002694)
Formula: C6H14NO8P (259.0457)
9.41 (100%) DESI
[NOVOCELL:BACKGROUND] blank
MSI_000058260 Reliable 224.0316 224.0312 ~ 224.0319
MzDiff: 3.1 ppm
Glucosamine 6-phosphate (BioDeep_00000002694)
Formula: C6H14NO8P (259.0457)
3.69 (100%) DESI
[NOVOCELL:BACKGROUND] blank
MSI_000046298 Reliable 224.0275 224.0275 ~ 224.0275
MzDiff: none
Glucosamine 6-phosphate (BioDeep_00000002694)
Formula: C6H14NO8P (259.0457)
5.28 (100%) Mus musculus
[UBERON:0002107] liver
MSI_000043641 Unreliable 224.0284 224.0281 ~ 224.0285
MzDiff: 1.7 ppm
Glucosamine 6-phosphate (BioDeep_00000002694)
Formula: C6H14NO8P (259.0457)
3.11 (100%) Homo sapiens
[UBERON:0001043] esophagus
MSI_000032181 Unreliable 224.0272 224.0272 ~ 224.0272
MzDiff: none
2,4-dichloro-5-methoxy-3-methylphenol (BioDeep_00000252345)
Formula: C8H8Cl2O2 (205.9901)
1.5 (100%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000033775 Unreliable 224.0266 224.0266 ~ 224.0266
MzDiff: none
2,4-dichloro-5-methoxy-3-methylphenol (BioDeep_00000252345)
Formula: C8H8Cl2O2 (205.9901)
0.65 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000038486 Unreliable 224.0249 224.0249 ~ 224.0249
MzDiff: none
2,4-dichloro-5-methoxy-3-methylphenol (BioDeep_00000252345)
Formula: C8H8Cl2O2 (205.9901)
1.92 (100%) Posidonia oceanica
[PO:0005059] root endodermis
MSI_000055749 Unreliable 224.0335 224.0335 ~ 224.0335
MzDiff: none
Glucosamine 6-phosphate (BioDeep_00000002694)
Formula: C6H14NO8P (259.0457)
0.37 (100%) Homo sapiens
[UBERON:0007779] transudate
MSI_000058666 Unreliable 224.0273 224.0273 ~ 224.0273
MzDiff: none
Thiabendazole (BioDeep_00000001829)
Formula: C10H7N3S (201.0361)
1.1 (100%) Mus musculus
[UBERON:0001950] neocortex
MSI_000060040 Unavailable 224.0273 224.0273 ~ 224.0273
MzDiff: none
Thiabendazole (BioDeep_00000001829)
Formula: C10H7N3S (201.0361)
-0.84 (100%) Mus musculus
[UBERON:0002298] brainstem
MSI_000060528 Unavailable 224.0273 224.0273 ~ 224.0273
MzDiff: none
Thiabendazole (BioDeep_00000001829)
Formula: C10H7N3S (201.0361)
-0.26 (100%) Mus musculus
[UBERON:0002421] hippocampal formation

Found 29 Sample Hits
Metabolite Species Sample
2,4-dichloro-5-methoxy-3-methylphenol

Formula: C8H8Cl2O2 (205.9901)
Adducts: [M+NH4]+ (Ppm: 11.8)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

2,4-dichloro-5-methoxy-3-methylphenol

Formula: C8H8Cl2O2 (205.9901)
Adducts: [M+NH4]+ (Ppm: 14.5)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

2,4-dichloro-5-methoxy-3-methylphenol

Formula: C8H8Cl2O2 (205.9901)
Adducts: [M+NH4]+ (Ppm: 4.2)
Posidonia oceanica (root)
MS1_20180404_PO_1200
Resolution: 17μm, 193x208

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 18.1)
Homo sapiens (esophagus)
LNTO22_1_4
Resolution: 17μm, 82x80

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.7)
Homo sapiens (esophagus)
LNTO29_16_2
Resolution: 17μm, 95x101

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Homo sapiens (esophagus)
TO42T
Resolution: 17μm, 69x81

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 19.4)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 19.4)
Homo sapiens (esophagus)
LNTO22_1_9
Resolution: 75μm, 89x74

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.7)
Homo sapiens (colorectal adenocarcinoma)
80TopL, 50TopR, 70BottomL, 60BottomR-profile
Resolution: 17μm, 137x136

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.3)
Homo sapiens (colorectal adenocarcinoma)
520TopL, 490TopR, 510BottomL, 500BottomR-profile
Resolution: 17μm, 147x131

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.3)
Homo sapiens (colorectal adenocarcinoma)
439TopL, 409TopR, 429BottomL, 419BottomR-profile
Resolution: 17μm, 157x136

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Homo sapiens (NA)
160TopL,130TopR,150BottomL,140BottomR-profile
Resolution: 17μm, 142x136

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 2.9)
Homo sapiens (esophagus)
LNTO26_7_1
Resolution: 17μm, 75x74

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Homo sapiens (esophagus)
LNTO26_7_3
Resolution: 75μm, 82x88

Description

Thiabendazole

Formula: C10H7N3S (201.0361)
Adducts: [M+Na]+ (Ppm: 0.5)
Homo sapiens (esophagus)
LNTO30_8M_4
Resolution: 75μm, 62x48

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 14.9)
Homo sapiens (esophagus)
LNTO30_8M_5
Resolution: 75μm, 56x54

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Homo sapiens (esophagus)
LNTO30_17_2
Resolution: 75μm, 82x54

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 14.9)
Homo sapiens (esophagus)
LNTO22_1_7
Resolution: 75μm, 69x54

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 1.1)
Homo sapiens (esophagus)
LNTO22_1_8
Resolution: 75μm, 69x61

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 4.3)
Homo sapiens (esophagus)
LNTO22_2_2
Resolution: 75μm, 135x94

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.3)
Homo sapiens (esophagus)
LNTO30_7_2
Resolution: 75μm, 82x68

Description

Thiabendazole

Formula: C10H7N3S (201.0361)
Adducts: [M+Na]+ (Ppm: 9)
Mus musculus (brain)
Brain01_Bregma-3-88b_centroid
Resolution: 17μm, 265x320

Description

Thiabendazole

Formula: C10H7N3S (201.0361)
Adducts: [M+Na]+ (Ppm: 6.8)
Mus musculus (brain)
Brain02_Bregma1-42_03
Resolution: 17μm, 483x403

Description

Thiabendazole

Formula: C10H7N3S (201.0361)
Adducts: [M+Na]+ (Ppm: 6.8)
Mus musculus (brain)
Brain02_Bregma-3-88
Resolution: 17μm, 288x282

Description

Thiabendazole

Formula: C10H7N3S (201.0361)
Adducts: [M+Na]+ (Ppm: 6.8)
Mus musculus (brain)
Brain02_Bregma-1-46
Resolution: 17μm, 294x399

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.6)
Homo sapiens (colorectal adenocarcinoma)
240TopL, 210TopR, 230BottomL, 220BottomR-centroid
Resolution: 50μm, 142x141

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.2)
Homo sapiens (colorectal adenocarcinoma)
200TopL, 170TopR, 190BottomL, 180BottomR-centroid
Resolution: 50μm, 132x126

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 17.6)
Homo sapiens (colorectal adenocarcinoma)
160TopL,130TopR,150BottomL,140BottomR-centroid
Resolution: 50μm, 142x136

Description

Glucosamine 6-phosphate

Formula: C6H14NO8P (259.0457)
Adducts: [M+H-2H2O]+ (Ppm: 16.7)
Homo sapiens (colorectal adenocarcinoma)
120TopL, 90TopR, 110BottomL, 100BottomR-centroid
Resolution: 50μm, 132x136

Description