在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 10 Reference Ions Near m/z 217.0976
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000053923 Reliable 217.1044 217.104 ~ 217.1049
MzDiff: 3.7 ppm
Isoketocamphoric acid (BioDeep_00000226792)
Formula: C10H16O5 (216.0998)
3.85 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000046116 Reliable 217.1049 217.1049 ~ 217.1049
MzDiff: none
N-acetylcitrulline (BioDeep_00000003005)
Formula: C8H15N3O4 (217.1063)
6.28 (100%) Mus musculus
[UBERON:0002107] liver
MSI_000012877 Unavailable 217.105 217.105 ~ 217.105
MzDiff: none
1-Methylpyrene (BioDeep_00000172253)
Formula: C17H12 (216.0939)
-0.51 (100%) Plant
[PO:0005020] vascular bundle
MSI_000014076 Unavailable 217.105 217.105 ~ 217.105
MzDiff: none
1-Methylpyrene (BioDeep_00000172253)
Formula: C17H12 (216.0939)
-0.29 (100%) Plant
[PO:0005417] phloem
MSI_000014900 Unavailable 217.105 217.105 ~ 217.105
MzDiff: none
1-Methylpyrene (BioDeep_00000172253)
Formula: C17H12 (216.0939)
-0.49 (100%) Plant
[PO:0006036] root epidermis
MSI_000018351 Unreliable 217.105 217.105 ~ 217.105
MzDiff: none
1-Methylpyrene (BioDeep_00000172253)
Formula: C17H12 (216.0939)
1.78 (100%) Plant
[PO:0020124] root stele
MSI_000019937 Unavailable 217.105 217.105 ~ 217.105
MzDiff: none
1-Methylpyrene (BioDeep_00000172253)
Formula: C17H12 (216.0939)
-0.5 (100%) Plant
[PO:0025197] stele
MSI_000033580 Unreliable 217.1049 217.1049 ~ 217.1049
MzDiff: none
Isoketocamphoric acid (BioDeep_00000226792)
Formula: C10H16O5 (216.0998)
1.59 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000037240 Unreliable 217.1041 217.1041 ~ 217.1041
MzDiff: none
Isoketocamphoric acid (BioDeep_00000226792)
Formula: C10H16O5 (216.0998)
1.98 (100%) Posidonia oceanica
[UBERON:0000329] hair root
MSI_000057078 Unreliable 217.0976 217.0976 ~ 217.0976
MzDiff: none
Phenylalanylserine (BioDeep_00000026847)
Formula: C12H16N2O4 (252.111)
1.41 (100%) Homo sapiens
[UBERON:0007779] transudate

Found 5 Sample Hits
Metabolite Species Sample
N-acetylcitrulline

Formula: C8H15N3O4 (217.1063)
Adducts: [M]+ (Ppm: 7.4)
Marker Pen (NA)
3ul_0.8Mpa_RAW_20241016-PAPER PNMK
Resolution: 30μm, 315x42

Description

By writing the four English letters “PNMK” on white paper with a marker pen, and then scanning with a DESI ion source to obtain the scanning result. The signal of the chemical substances on the marker pen used appears on the channel with an m/z value of 322.1918, 323.1953, 546.4010, and etc, from the single cell deconvolution sampling layer class_4. This test data was tested by chuxiaoping from PANOMIX’s R&D laboratory.

Cyclomethyltryptophan

Formula: C12H12N2O2 (216.0899)
Adducts: [M+H]+ (Ppm: 16.4)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

Isoketocamphoric acid

Formula: C10H16O5 (216.0998)
Adducts: [M+H]+ (Ppm: 13.6)
Posidonia oceanica (root)
20190828_MS1_A19r-22
Resolution: 17μm, 292x279

Description

Phenylalanylserine

Formula: C12H16N2O4 (252.111)
Adducts: [M+H-2H2O]+ (Ppm: 2.1)
Homo sapiens (esophagus)
LNTO22_1_4
Resolution: 17μm, 82x80

Description

N-acetylcitrulline

Formula: C8H15N3O4 (217.1063)
Adducts: [M]+ (Ppm: 3.7)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.