在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 10 Reference Ions Near m/z 209.957
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000054466 Reliable 209.9478 209.9477 ~ 209.9479
MzDiff: 0.7 ppm
2,3-dichloromuconic acid (BioDeep_00002309257)
Formula: C6H4Cl2O4 (209.9487)
2.38 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000053240 Reliable 209.9492 209.949 ~ 209.9493
MzDiff: 1.2 ppm
Rhenium (BioDeep_00000033106)
Formula: Re (186.9558)
4.93 (67%) DESI
[NOVOCELL:BACKGROUND] blank
MSI_000032598 Unreliable 209.9478 209.9477 ~ 209.9479
MzDiff: 0.7 ppm
2,3-dichloromuconic acid (BioDeep_00002309257)
Formula: C6H4Cl2O4 (209.9487)
1.32 (100%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000012554 Unreliable 209.9485 209.9485 ~ 209.9485
MzDiff: none
Rhenium (BioDeep_00000033106)
Formula: Re (186.9558)
0.17 (100%) Plant
[PO:0005020] vascular bundle
MSI_000014010 Unavailable 209.9485 209.9485 ~ 209.9485
MzDiff: none
Rhenium (BioDeep_00000033106)
Formula: Re (186.9558)
-0.21 (100%) Plant
[PO:0005417] phloem
MSI_000014512 Unreliable 209.9485 209.9485 ~ 209.9485
MzDiff: none
Rhenium (BioDeep_00000033106)
Formula: Re (186.9558)
0.87 (100%) Plant
[PO:0006036] root epidermis
MSI_000019378 Unreliable 209.9485 209.9485 ~ 209.9485
MzDiff: none
Rhenium (BioDeep_00000033106)
Formula: Re (186.9558)
0.77 (100%) Plant
[PO:0025197] stele
MSI_000034729 Unreliable 209.9477 209.9477 ~ 209.9477
MzDiff: none
2,3-dichloromuconic acid (BioDeep_00002309257)
Formula: C6H4Cl2O4 (209.9487)
0.02 (100%) Posidonia oceanica
[PO:0006036] root epidermis
MSI_000039243 Unreliable 209.9481 209.9481 ~ 209.9481
MzDiff: none
2,3-dichloromuconic acid (BioDeep_00002309257)
Formula: C6H4Cl2O4 (209.9487)
0.85 (100%) Posidonia oceanica
[PO:0005059] root endodermis
MSI_000039829 Unreliable 209.9479 209.9479 ~ 209.9479
MzDiff: none
2,3-dichloromuconic acid (BioDeep_00002309257)
Formula: C6H4Cl2O4 (209.9487)
1.12 (100%) Posidonia oceanica
[PO:0005417] phloem

Found 3 Sample Hits
Metabolite Species Sample
Potassium fumarate

Formula: C4H2K2O4 (191.9227)
Adducts: [M+NH4]+ (Ppm: 2.1)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

2,4,6-Trichlorophenylhydrazine

Formula: C6H5Cl3N2 (209.9518)
Adducts: [M]+ (Ppm: 9.4)
Homo sapiens (colorectal adenocarcinoma)
80TopL, 50TopR, 70BottomL, 60BottomR-profile
Resolution: 17μm, 137x136

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).

Rhenium

Formula: Re (186.9558)
Adducts: [M+Na]+ (Ppm: 19.6)
Homo sapiens (colorectal adenocarcinoma)
439TopL, 409TopR, 429BottomL, 419BottomR-profile
Resolution: 17μm, 157x136

Description

The human colorectal adenocarcinoma sample was excised during a surgical operation performed at the Imperial College Healthcare NHS Trust. The sample and procedures were carried out in accordance with ethical approval (14/EE/0024).