在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 7 Reference Ions Near m/z 174.9919
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000017405 Reliable 175.0002 175.0002 ~ 175.0002
MzDiff: 0.1 ppm
3,4,6-trihydroxy-1-oxo-3h-2-benzofuran-5-carbaldehyde (BioDeep_00002092159)
Formula: C9H6O6 (210.0164)
2.5 (100%) Vitis vinifera
[PO:0009087] mesocarp
MSI_000053867 Reliable 174.9995 174.9993 ~ 174.9998
MzDiff: 2.2 ppm
3,4,6-trihydroxy-1-oxo-3h-2-benzofuran-5-carbaldehyde (BioDeep_00002092159)
Formula: C9H6O6 (210.0164)
4.06 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000017041 Unavailable 175.0002 175.0002 ~ 175.0002
MzDiff: 0.1 ppm
3,4,6-trihydroxy-1-oxo-3h-2-benzofuran-5-carbaldehyde (BioDeep_00002092159)
Formula: C9H6O6 (210.0164)
-0.31 (100%) Vitis vinifera
[PO:0009086] endocarp
MSI_000012581 Unreliable 175.0005 175.0005 ~ 175.0005
MzDiff: none
Phenyl phosphonothioate (BioDeep_00000182338)
Formula: C6H7O2PS (173.9904)
0.04 (100%) Plant
[PO:0005020] vascular bundle
MSI_000014745 Unavailable 175.0005 175.0005 ~ 175.0005
MzDiff: none
Phenyl phosphonothioate (BioDeep_00000182338)
Formula: C6H7O2PS (173.9904)
-0.33 (100%) Plant
[PO:0006036] root epidermis
MSI_000018614 Unreliable 175.0005 175.0005 ~ 175.0005
MzDiff: none
Phenyl phosphonothioate (BioDeep_00000182338)
Formula: C6H7O2PS (173.9904)
1.7 (100%) Plant
[PO:0020124] root stele
MSI_000037844 Unreliable 174.9919 174.9919 ~ 174.9919
MzDiff: none
8-chloro-9-hydroxy-1h-2-benzoxepin-3-one (BioDeep_00002127473)
Formula: C10H7ClO3 (210.0084)
0.04 (100%) Posidonia oceanica
[UBERON:0000329] hair root

Found 5 Sample Hits
Metabolite Species Sample
Pyridin-3-yl sulfate

Formula: C5H4NO4S- (173.9861)
Adducts: [M+H]+ (Ppm: 5)
Marker Pen (NA)
3ul_0.8Mpa_RAW_20241016-PAPER PNMK
Resolution: 30μm, 315x42

Description

By writing the four English letters “PNMK” on white paper with a marker pen, and then scanning with a DESI ion source to obtain the scanning result. The signal of the chemical substances on the marker pen used appears on the channel with an m/z value of 322.1918, 323.1953, 546.4010, and etc, from the single cell deconvolution sampling layer class_4. This test data was tested by chuxiaoping from PANOMIX’s R&D laboratory.

3,4,6-trihydroxy-1-oxo-3h-2-benzofuran-5-carbaldehyde

Formula: C9H6O6 (210.0164)
Adducts: [M+H-2H2O]+ (Ppm: 13.6)
Vitis vinifera (Fruit)
grape_dhb_164_1
Resolution: 17μm, 136x122

Description

Grape berries fruit, condition: Late

8-chloro-9-hydroxy-1h-2-benzoxepin-3-one

Formula: C10H7ClO3 (210.0084)
Adducts: [M+H-2H2O]+ (Ppm: 15)
Posidonia oceanica (root)
20190828_MS1_A19r-22
Resolution: 17μm, 292x279

Description

Magnesium hydrogen phosphate trihydrate

Formula: H7MgO7P (173.978)
Adducts: [M+H]+ (Ppm: 4.2)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.

12,13-epoxy-9-alkoxy-10E-octadecenoate

Formula: C5H4BrN (156.9527)
Adducts: [M+NH4]+ (Ppm: 18.7)
Homo sapiens (esophagus)
TO31T
Resolution: 75μm, 56x54

Description