在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 8 Reference Ions Near m/z 156.0427
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000045863 Reliable 156.0427 156.0427 ~ 156.0427
MzDiff: none
5-Hydroxyindoleacetic acid (BioDeep_00000001263)
Formula: C10H9NO3 (191.0582)
9.8 (100%) Mus musculus
[UBERON:0002107] liver
MSI_000017819 Reliable 156.0388 156.0388 ~ 156.0389
MzDiff: 0.5 ppm
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
1.33 (100%) Vitis vinifera
[PO:0009087] mesocarp
MSI_000001427 Unavailable 156.0409 156.0409 ~ 156.0409
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
-0.71 (100%) Mus musculus
[UBERON:0001224] renal pelvis
MSI_000001882 Unavailable 156.0409 156.0409 ~ 156.0409
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
-0.71 (100%) Mus musculus
[UBERON:0001225] cortex of kidney
MSI_000002347 Unavailable 156.0409 156.0409 ~ 156.0409
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
-0.71 (100%) Mus musculus
[UBERON:0001293] outer medulla of kidney
MSI_000016334 Unreliable 156.0389 156.0389 ~ 156.0389
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
0.06 (100%) Vitis vinifera
[PO:0009086] endocarp
MSI_000033391 Unreliable 156.0377 156.0377 ~ 156.0377
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
2.14 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000038521 Unreliable 156.0406 156.0406 ~ 156.0406
MzDiff: none
Orotic acid (BioDeep_00000001401)
Formula: C5H4N2O4 (156.0171)
1.75 (100%) Posidonia oceanica
[PO:0005059] root endodermis

Found 4 Sample Hits
Metabolite Species Sample
Orotic acid

Formula: C5H4N2O4 (156.0171)
Adducts: [M-H2O+NH4]+ (Ppm: 3.4)
Mus musculus (Kidney)
FULL_MS_centriod_CHCA_20210819
Resolution: 17μm, 638x437

Description

AP-MALDI instrument demo test, mass spectrum scan in centroid mode.

Orotic acid

Formula: C5H4N2O4 (156.0171)
Adducts: [M-H2O+NH4]+ (Ppm: 1.5)
Posidonia oceanica (root)
MS1_20180404_PO_1200
Resolution: 17μm, 193x208

Description

Orotic acid

Formula: C5H4N2O4 (156.0171)
Adducts: [M-H2O+NH4]+ (Ppm: 3.4)
Homo sapiens (esophagus)
LNTO22_1_4
Resolution: 17μm, 82x80

Description

5-Hydroxyindoleacetic acid

Formula: C10H9NO3 (191.0582)
Adducts: [M+H-2H2O]+ (Ppm: 10.8)
Mus musculus (Liver)
Salmonella_final_pos_recal
Resolution: 17μm, 691x430

Description

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histopathology with mass spectrometry imaging (MSI) and same section imaging mass cytometry (IMC) to study the effects of Salmonella Typhimurium infection in the liver of a mouse model using the S. Typhimurium strains SL3261 and SL1344. This approach enables correlation of tissue morphology and specific cell phenotypes with molecular images of tissue metabolism. IMC revealed a marked increase in immune cell markers and localization in immune aggregates in infected tissues. A correlative computational method (network analysis) was deployed to find metabolic features associated with infection and revealed metabolic clusters of acetyl carnitines, as well as phosphatidylcholine and phosphatidylethanolamine plasmalogen species, which could be associated with pro-inflammatory immune cell types. By developing an IMC marker for the detection of Salmonella LPS, we were further able to identify and characterize those cell types which contained S. Typhimurium. [dataset] Nicole Strittmatter. Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging, metabolights_dataset, V1; 2022. https://www.ebi.ac.uk/metabolights/MTBLS2671.