在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 8 Reference Ions Near m/z 613.3499
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000007940 Unreliable 613.346 613.346 ~ 613.346
MzDiff: 0.0 ppm
Remikiren (BioDeep_00000006505)
Formula: C33H50N4O6S (630.3451)
6.01 (100%) Rattus norvegicus
[UBERON:0004360] cauda epididymis
MSI_000004387 Unreliable 613.3471 613.3471 ~ 613.3471
MzDiff: none
Remikiren (BioDeep_00000006505)
Formula: C33H50N4O6S (630.3451)
0.69 (100%) Homo sapiens
[UBERON:0002107] liver
MSI_000013277 Unavailable 613.3478 613.3478 ~ 613.3478
MzDiff: none
pyrrhoxanthin (BioDeep_00000598284)
Formula: C39H48O6 (612.3451)
-0.92 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013548 Unreliable 613.3478 613.3478 ~ 613.3478
MzDiff: none
pyrrhoxanthin (BioDeep_00000598284)
Formula: C39H48O6 (612.3451)
0.8 (100%) Plant
[PO:0005417] phloem
MSI_000015274 Unavailable 613.3478 613.3478 ~ 613.3478
MzDiff: none
pyrrhoxanthin (BioDeep_00000598284)
Formula: C39H48O6 (612.3451)
-0.66 (100%) Plant
[PO:0006036] root epidermis
MSI_000018805 Unreliable 613.3478 613.3478 ~ 613.3478
MzDiff: none
pyrrhoxanthin (BioDeep_00000598284)
Formula: C39H48O6 (612.3451)
1.33 (100%) Plant
[PO:0020124] root stele
MSI_000033063 Unreliable 613.3473 613.3473 ~ 613.3473
MzDiff: none
1-[(1r,9s,10r,11r,12e,17s)-12-ethylidene-10-[(1r,13s,19s,21r)-14-ethylidene-10-oxa-8,16-diazahexacyclo[11.5.2.1¹,⁸.0²,⁷.0¹⁶,¹⁹.0¹²,²¹]henicosa-2,4,6,11-tetraen-9-yl]-8,14-diazapentacyclo[9.5.2.0¹,⁹.0²,⁷.0¹⁴,¹⁷]octadeca-2,4,6-trien-8-yl]ethanone (BioDeep_00002067533)
Formula: C40H44N4O2 (612.3464)
2.45 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000038282 Unreliable 613.3484 613.3484 ~ 613.3484
MzDiff: none
Peridinin (BioDeep_00000182271)
Formula: C39H50O7 (630.3556)
1.5 (100%) Posidonia oceanica
[PO:0005020] vascular bundle

Found 9 Sample Hits
Metabolite Species Sample
pyrrhoxanthin

Formula: C39H48O6 (612.3451)
Adducts: [M+H]+ (Ppm: 7.4)
Plant (Root)
MPIMM_035_QE_P_PO_6pm
Resolution: 30μm, 165x170

Description

Remikiren

Formula: C33H50N4O6S (630.3451)
Adducts: [M+H-H2O]+ (Ppm: 8.6)
Homo sapiens (Liver)
20171107_FIT4_DHBpos_p70_s50
Resolution: 50μm, 70x70

Description

m/z_613.3424

Formula: - (n/a)
Adducts: (Ppm: 0)
Mus musculus (Lung)
image1
Resolution: 40μm, 187x165

Description

Fig. 2 MALDI-MSI data from the same mouse lung tissue analyzed in Fig. 1. A: Optical image of the post-MSI, H&E-stained tissue section. B–D, F–G: Ion images of (B) m/z 796.6855 ([U13C-DPPC+Na]+), (C) m/z 756.5514 ([PC32:0+Na]+), (D) m/z 765.6079 ([D9-PC32:0+Na]+), (F) m/z 754.5359 ([PC32:1+Na]+), and (G) m/z 763.5923 ([D9-PC32:1+Na]+). E, H: Ratio images of (E) [D9-PC32:0+Na]+:[PC32:0+Na]+ and (H) [D9-PC32:1+Na]+:[PC32:1+Na]+. Part-per-million (ppm) mass errors are indicated in parentheses. All images were visualized using total-ion-current normalization and using hotspot removal (high quantile = 99%). DPPC = PC16:0/16:0. U13C-DPPC, universally 13C-labeled dipalmitoyl PC; PC, phosphatidylcholine; MSI, mass spectrometry imaging; H&E, hematoxylin and eosin. Fig 1-3, Fig S1-S3, S5

Remikiren

Formula: C33H50N4O6S (630.3451)
Adducts: [M+H-H2O]+ (Ppm: 13.2)
Mus musculus (Lung)
image1
Resolution: 40μm, 187x165

Description

Fig. 2 MALDI-MSI data from the same mouse lung tissue analyzed in Fig. 1. A: Optical image of the post-MSI, H&E-stained tissue section. B–D, F–G: Ion images of (B) m/z 796.6855 ([U13C-DPPC+Na]+), (C) m/z 756.5514 ([PC32:0+Na]+), (D) m/z 765.6079 ([D9-PC32:0+Na]+), (F) m/z 754.5359 ([PC32:1+Na]+), and (G) m/z 763.5923 ([D9-PC32:1+Na]+). E, H: Ratio images of (E) [D9-PC32:0+Na]+:[PC32:0+Na]+ and (H) [D9-PC32:1+Na]+:[PC32:1+Na]+. Part-per-million (ppm) mass errors are indicated in parentheses. All images were visualized using total-ion-current normalization and using hotspot removal (high quantile = 99%). DPPC = PC16:0/16:0. U13C-DPPC, universally 13C-labeled dipalmitoyl PC; PC, phosphatidylcholine; MSI, mass spectrometry imaging; H&E, hematoxylin and eosin. Fig 1-3, Fig S1-S3, S5

Remikiren

Formula: C33H50N4O6S (630.3451)
Adducts: [M+H-H2O]+ (Ppm: 8.5)
Mus musculus (Lung)
image5
Resolution: 40μm, 163x183

Description

Supplementary Figure S8. MALDI-MSI data of mouse lung tissue administered with D9-choline and U 13C-DPPC–containing Poractant alfa surfactant (labels administered 18 h prior to sacrifice). Ion images of (a) m/z 796.6856 ([U13C-DPPC+Na]+), (b) m/z 756.5154 [PC32:0+Na]+ and (c) m/z 765.6079 ([D9-PC32:0+Na]+). (d) Overlay image of [U13C-DPPC+Na]+ (red) and [D9-PC32:0+Na]+ (green). Parts per million (ppm) mass errors are indicated in parentheses. All images were visualised using totalion-current normalisation and using hotspot removal (high quantile = 99%). DPPC = PC16:0/16:0.

Remikiren

Formula: C33H50N4O6S (630.3451)
Adducts: [M+H-H2O]+ (Ppm: 8.8)
Mus musculus (Lung)
image2
Resolution: 40μm, 550x256

Description

Supplementary Figure S6. Ion distribution images for (a) [PC36:4+Na]+ (m/z 804.5514) and (b) [PC38:6+Na]+ (m/z 828.5515) obtained from mouse lung tissue collected 6 h after administration of D9- choline and U13C-DPPC–containing CHF5633. Parts-per-million (ppm) mass errors are indicated in parentheses. (c) Magnification of the boxed region in (a) with selected bronchiolar regions outlined in white boxes. (d) The corresponding H&E-stained tissue section with the same selected bronchiolar regions outlined in black boxes. These data demonstrate the co-localisation of the polyunsaturated lipids PC36:4 and PC38:6 with the bronchiolar regions of the lung. All MSI images were visualised using total ion current normalisation and hotspot removal (high quantile = 99%).

1-[(1r,9s,10r,11r,12e,17s)-12-ethylidene-10-[(1r,13s,19s,21r)-14-ethylidene-10-oxa-8,16-diazahexacyclo[11.5.2.1¹,⁸.0²,⁷.0¹⁶,¹⁹.0¹²,²¹]henicosa-2,4,6,11-tetraen-9-yl]-8,14-diazapentacyclo[9.5.2.0¹,⁹.0²,⁷.0¹⁴,¹⁷]octadeca-2,4,6-trien-8-yl]ethanone

Formula: C40H44N4O2 (612.3464)
Adducts: [M+H]+ (Ppm: 10.4)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

Peridinin

Formula: C39H50O7 (630.3556)
Adducts: [M+H-H2O]+ (Ppm: 6.4)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

Remikiren

Formula: C33H50N4O6S (630.3451)
Adducts: [M+H-H2O]+ (Ppm: 9.8)
Drosophila melanogaster (brain)
Drosophila18
Resolution: 5μm, 686x685

Description

Sample information Organism: Drosophila melanogaster Organism part: Brain Condition: Healthy Sample preparation Sample stabilisation: Frozen Tissue modification: Frozen MALDI matrix: 2,5-dihydroxybenzoic acid (DHB) MALDI matrix application: TM sprayer Solvent: Aceton/water MS analysis Polarity: Positive Ionisation source: Prototype Analyzer: Orbitrap Pixel size: 5μm × 5μm Annotation settings m/z tolerance (ppm): 3 Analysis version: Original MSM Pixel count: 469910 Imzml file size: 696.23 MB Ibd file size: 814.11 MB