在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 18 Reference Ions Near m/z 556.0354
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000054209 Unreliable 556.0406 556.0401 ~ 556.041
MzDiff: 3.6 ppm
6-{[5,7-dihydroxy-2-(4-methoxyphenyl)-4-oxochromen-8-yl]oxy}-3,4-dihydroxy-5-(sulfooxy)oxane-2-carboxylic acid (BioDeep_00002235437)
Formula: C22H20O15S (556.0523)
3.16 (60%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000010996 Unreliable 556.0285 556.0285 ~ 556.0285
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
2.68 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000011003 Unreliable 556.0372 556.0372 ~ 556.0372
MzDiff: none
trans-zeatin riboside triphosphate (BioDeep_00000011186)
Formula: C15H24N5O14P3 (591.0533)
2.65 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000010456 Unavailable 556.0404 556.0404 ~ 556.0404
MzDiff: 0.1 ppm
trans-zeatin riboside triphosphate (BioDeep_00000011186)
Formula: C15H24N5O14P3 (591.0533)
-1.47 (100%) Bathymodiolus
[UBERON:0009120] gill filament
MSI_000009499 Unavailable 556.0285 556.0285 ~ 556.0285
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
-0.59 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000009553 Unavailable 556.0372 556.0372 ~ 556.0372
MzDiff: none
trans-zeatin riboside triphosphate (BioDeep_00000011186)
Formula: C15H24N5O14P3 (591.0533)
-0.89 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000012195 Unavailable 556.0404 556.0404 ~ 556.0404
MzDiff: 0.1 ppm
trans-zeatin riboside triphosphate (BioDeep_00000011186)
Formula: C15H24N5O14P3 (591.0533)
-1 (100%) Bathymodiolus
[UBERON:2000211] gill lamella
MSI_000013019 Unavailable 556.0405 556.0405 ~ 556.0405
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
-0.62 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013823 Unreliable 556.0405 556.0405 ~ 556.0405
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
0.07 (100%) Plant
[PO:0005417] phloem
MSI_000015205 Unavailable 556.0405 556.0405 ~ 556.0405
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
-0.62 (100%) Plant
[PO:0006036] root epidermis
MSI_000018590 Unreliable 556.0405 556.0405 ~ 556.0405
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
1.71 (100%) Plant
[PO:0020124] root stele
MSI_000020205 Unavailable 556.0405 556.0405 ~ 556.0405
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
-0.55 (100%) Plant
[PO:0025197] stele
MSI_000024963 Unreliable 556.0284 556.0284 ~ 556.0284
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
1.75 (100%) Mus musculus
[UBERON:0004269] upper arm connective tissue
MSI_000032926 Unavailable 556.04 556.04 ~ 556.04
MzDiff: none
Not Annotated -0.05 (0%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000033801 Unreliable 556.04 556.04 ~ 556.04
MzDiff: none
Not Annotated 0.55 (0%) Posidonia oceanica
[PO:0005352] xylem
MSI_000040226 Unavailable 556.0407 556.0407 ~ 556.0407
MzDiff: none
6-{[5,7-dihydroxy-2-(4-methoxyphenyl)-4-oxochromen-8-yl]oxy}-3,4-dihydroxy-5-(sulfooxy)oxane-2-carboxylic acid (BioDeep_00002235437)
Formula: C22H20O15S (556.0523)
-0.08 (100%) Posidonia oceanica
[PO:0005417] phloem
MSI_000050398 Unreliable 556.0399 556.0399 ~ 556.0399
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
0 (100%) Mytilus edulis
[UBERON:0009120] gill filament
MSI_000051134 Unreliable 556.0399 556.0399 ~ 556.0399
MzDiff: none
C.I. Direct Red 45 (BioDeep_00000034529)
Formula: C24H17N3O7S3 (555.0229)
0 (100%) Mytilus edulis
[UBERON:2001856] gill ray

Found 5 Sample Hits
Metabolite Species Sample
trans-zeatin riboside triphosphate

Formula: C15H24N5O14P3 (591.0533)
Adducts: [M+H-2H2O]+ (Ppm: 4)
Mus musculus (Urinary bladder)
HR2MSI_mouse_urinary_bladder - S096
Resolution: 10μm, 260x134

Description

Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset)
The spatial distribution of phospholipids in a tissue section of mouse urinary bladder was analyzed by MALDI MS imaging at 10 micrometer pixel size with high mass resolution (using an LTQ Orbitrap mass spectrometer).

R, ö, mpp A, Guenther S, Schober Y, Schulz O, Takats Z, Kummer W, Spengler B, Histology by mass spectrometry: label-free tissue characterization obtained from high-accuracy bioanalytical imaging. Angew Chem Int Ed Engl, 49(22):3834-8(2010)

Fig. S2: Single ion images of compounds shown in Fig. 1A-B : (upper left to lower right) m/z = 743.5482 (unknown), m/z = 741.5307 (SM (16:0), [M+K]+), m/z = 798.5410 (PC (34:1), [M+K]+), m/z = 616.1767 (heme b, M+), m/z = 772.5253 (PC (32:0), [M+K]+).

Stability of determined mass values was in the range of +/- 1 ppm over 22 hours of measurement (Fig. S4), with a standard deviation of 0.56 ppm. Accuracy data were obtained during tissue scanning experiments by monitoring the mass signal at nominal mass 798. The internal lock mass function of the Orbitrap instrument was used for automatic calibration during imaging measurements, using the known matrix-related ion signals at m/z = 137.0233, m/z = 444.0925 and m/z = 716.1246.

m/z_556.04

Formula: - (n/a)
Adducts: (Ppm: 0)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

m/z_556.0401

Formula: - (n/a)
Adducts: (Ppm: 0)
Posidonia oceanica (root)
20190822_MS1_A19r-19
Resolution: 17μm, 303x309

Description

Seagrasses are among the most efficient sinks of carbon dioxide on Earth. While carbon sequestration in terrestrial plants is linked to the microorganisms living in their soils, the interactions of seagrasses with their rhizospheres are poorly understood. Here, we show that the seagrass, Posidonia oceanica excretes sugars, mainly sucrose, into its rhizosphere. These sugars accumulate to µM concentrations—nearly 80 times higher than previously observed in marine environments. This finding is unexpected as sugars are readily consumed by microorganisms. Our experiments indicated that under low oxygen conditions, phenolic compounds from P. oceanica inhibited microbial consumption of sucrose. Analyses of the rhizosphere community revealed that many microbes had the genes for degrading sucrose but these were only expressed by a few taxa that also expressed genes for degrading phenolics. Given that we observed high sucrose concentrations underneath three other species of marine plants, we predict that the presence of plant-produced phenolics under low oxygen conditions allows the accumulation of labile molecules across aquatic rhizospheres.

5-Amino-1-[carboxy(methyl)amino]pentane-1,1,2,2,3,3,4,4,5-nonacarboxylic acid

Formula: C16H16N2O20 (556.0296)
Adducts: [M]+ (Ppm: 11.3)
Mytilus edulis (mantle)
20190201_MS38_Crassostrea_Mantle_350-1500_DHB_pos_A28_10um_270x210
Resolution: 10μm, 270x210

Description

C.I. Direct Red 45

Formula: C24H17N3O7S3 (555.0229)
Adducts: [M+H]+ (Ppm: 17.6)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell