在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 14 Reference Ions Near m/z 501.0586
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000010828 Unreliable 501.0548 501.0548 ~ 501.0548
MzDiff: none
2',4,4',6,6'-pentakis(acetyloxy)-3'-chloro-[1,1'-biphenyl]-2-yl acetate (BioDeep_00002089224)
Formula: C24H21ClO12 (536.0721)
3.11 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000010975 Unreliable 501.0632 501.0632 ~ 501.0632
MzDiff: none
3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide (BioDeep_00000035535)
Formula: C23H20O15 (536.0802)
2.75 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000009725 Unavailable 501.0632 501.0632 ~ 501.0632
MzDiff: none
3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide (BioDeep_00000035535)
Formula: C23H20O15 (536.0802)
-1.54 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000009830 Unavailable 501.0548 501.0548 ~ 501.0548
MzDiff: none
2',4,4',6,6'-pentakis(acetyloxy)-3'-chloro-[1,1'-biphenyl]-2-yl acetate (BioDeep_00002089224)
Formula: C24H21ClO12 (536.0721)
-1.75 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000016101 Unreliable 501.0639 501.0639 ~ 501.0639
MzDiff: none
quercetin 3-O-glucuronide (BioDeep_00000398145)
Formula: C21H18O13 (478.0747)
2.48 (100%) Vitis vinifera
[PO:0009085] exocarp
MSI_000032533 Unreliable 501.0585 501.0585 ~ 501.0586
MzDiff: 0.8 ppm
quercetin 3-O-glucuronide (BioDeep_00000398145)
Formula: C21H18O13 (478.0747)
2.57 (100%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000000907 Unavailable 501.0548 501.0548 ~ 501.0548
MzDiff: none
2',4,4',6,6'-pentakis(acetyloxy)-3'-chloro-[1,1'-biphenyl]-2-yl acetate (BioDeep_00002089224)
Formula: C24H21ClO12 (536.0721)
-0.78 (100%) Mus musculus
[CL:0000066] epithelial cell
MSI_000000918 Unavailable 501.0632 501.0632 ~ 501.0632
MzDiff: none
3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide (BioDeep_00000035535)
Formula: C23H20O15 (536.0802)
-0.81 (100%) Mus musculus
[CL:0000066] epithelial cell
MSI_000012985 Unavailable 501.0591 501.0591 ~ 501.0591
MzDiff: none
Neoglucobrassicin (BioDeep_00000003272)
Formula: C17H22N2O10S2 (478.0716)
-0.59 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013939 Unavailable 501.0591 501.0591 ~ 501.0591
MzDiff: none
Neoglucobrassicin (BioDeep_00000003272)
Formula: C17H22N2O10S2 (478.0716)
-0.11 (100%) Plant
[PO:0005417] phloem
MSI_000015117 Unavailable 501.0591 501.0591 ~ 501.0591
MzDiff: none
Neoglucobrassicin (BioDeep_00000003272)
Formula: C17H22N2O10S2 (478.0716)
-0.57 (100%) Plant
[PO:0006036] root epidermis
MSI_000018490 Unreliable 501.0591 501.0591 ~ 501.0591
MzDiff: none
Neoglucobrassicin (BioDeep_00000003272)
Formula: C17H22N2O10S2 (478.0716)
1.75 (100%) Plant
[PO:0020124] root stele
MSI_000019912 Unavailable 501.0591 501.0591 ~ 501.0591
MzDiff: none
Neoglucobrassicin (BioDeep_00000003272)
Formula: C17H22N2O10S2 (478.0716)
-0.49 (100%) Plant
[PO:0025197] stele
MSI_000050224 Unreliable 501.0582 501.0582 ~ 501.0582
MzDiff: none
3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide (BioDeep_00000035535)
Formula: C23H20O15 (536.0802)
0.4 (100%) Mytilus edulis
[UBERON:0009120] gill filament

Found 7 Sample Hits
Metabolite Species Sample
2',4,4',6,6'-pentakis(acetyloxy)-3'-chloro-[1,1'-biphenyl]-2-yl acetate

Formula: C24H21ClO12 (536.0721)
Adducts: [M+H-2H2O]+ (Ppm: 7)
Mus musculus (Urinary bladder)
HR2MSI_mouse_urinary_bladder - S096
Resolution: 10μm, 260x134

Description

Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset)
The spatial distribution of phospholipids in a tissue section of mouse urinary bladder was analyzed by MALDI MS imaging at 10 micrometer pixel size with high mass resolution (using an LTQ Orbitrap mass spectrometer).

R, ö, mpp A, Guenther S, Schober Y, Schulz O, Takats Z, Kummer W, Spengler B, Histology by mass spectrometry: label-free tissue characterization obtained from high-accuracy bioanalytical imaging. Angew Chem Int Ed Engl, 49(22):3834-8(2010)

Fig. S2: Single ion images of compounds shown in Fig. 1A-B : (upper left to lower right) m/z = 743.5482 (unknown), m/z = 741.5307 (SM (16:0), [M+K]+), m/z = 798.5410 (PC (34:1), [M+K]+), m/z = 616.1767 (heme b, M+), m/z = 772.5253 (PC (32:0), [M+K]+).

Stability of determined mass values was in the range of +/- 1 ppm over 22 hours of measurement (Fig. S4), with a standard deviation of 0.56 ppm. Accuracy data were obtained during tissue scanning experiments by monitoring the mass signal at nominal mass 798. The internal lock mass function of the Orbitrap instrument was used for automatic calibration during imaging measurements, using the known matrix-related ion signals at m/z = 137.0233, m/z = 444.0925 and m/z = 716.1246.

Neoglucobrassicin

Formula: C17H22N2O10S2 (478.0716)
Adducts: [M+Na]+ (Ppm: 3.4)
Plant (Root)
MPIMM_035_QE_P_PO_6pm
Resolution: 30μm, 165x170

Description

quercetin 3-O-glucuronide

Formula: C21H18O13 (478.0747)
Adducts: [M+Na]+ (Ppm: 10.9)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

quercetin 3-O-glucuronide

Formula: C21H18O13 (478.0747)
Adducts: [M+Na]+ (Ppm: 10.7)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide

Formula: C23H20O15 (536.0802)
Adducts: [M+H-2H2O]+ (Ppm: 15.5)
Mytilus edulis (mantle)
20190201_MS38_Crassostrea_Mantle_350-1500_DHB_pos_A28_10um_270x210
Resolution: 10μm, 270x210

Description

3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide

Formula: C23H20O15 (536.0802)
Adducts: [M+H-2H2O]+ (Ppm: 16.3)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell

3,3',5,5'-Tetrahydroxy-6,7-methyleneoxy-4'-methoxyflavone 3-glucuronide

Formula: C23H20O15 (536.0802)
Adducts: [M+H-2H2O]+ (Ppm: 16.1)
Mytilus edulis (mantle)
20190216_MS38_Mytilus_mantle_350-1500_DHB_pos_A26_10um_275x210
Resolution: 10μm, 275x210

Description