在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 10 Reference Ions Near m/z 494.0491
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000010945 Unreliable 494.0491 494.0491 ~ 494.0491
MzDiff: none
Cefmenoxime (BioDeep_00000033213)
Formula: C16H17N9O5S3 (511.0515)
2.84 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000010981 Unreliable 494.0575 494.0575 ~ 494.0575
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
2.73 (100%) Mus musculus
[UBERON:0012378] muscle layer of urinary bladder
MSI_000009366 Unavailable 494.0575 494.0575 ~ 494.0575
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
-0.18 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000009525 Unavailable 494.0491 494.0491 ~ 494.0491
MzDiff: none
Cefmenoxime (BioDeep_00000033213)
Formula: C16H17N9O5S3 (511.0515)
-0.76 (100%) Mus musculus
[UBERON:0004645] urinary bladder urothelium
MSI_000013162 Unavailable 494.0588 494.0588 ~ 494.0588
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
-0.77 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013718 Unreliable 494.0588 494.0588 ~ 494.0588
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
0.31 (100%) Plant
[PO:0005417] phloem
MSI_000015202 Unavailable 494.0588 494.0588 ~ 494.0588
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
-0.62 (100%) Plant
[PO:0006036] root epidermis
MSI_000018689 Unreliable 494.0588 494.0588 ~ 494.0588
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
1.62 (100%) Plant
[PO:0020124] root stele
MSI_000020196 Unavailable 494.0588 494.0588 ~ 494.0588
MzDiff: none
Clamikalant (BioDeep_00000177546)
Formula: C19H22ClN3O5S2 (471.0689)
-0.54 (100%) Plant
[PO:0025197] stele
MSI_000040059 Unreliable 494.0567 494.0567 ~ 494.0567
MzDiff: none
2-[9-hydroxy-4,6-dimethyl-7-oxo-9-(3,4,5-trichloro-1h-pyrrol-2-yl)non-8-en-2-yl]-4-methyl-5h-1,3-thiazole-4-carboxylic acid (BioDeep_00002095052)
Formula: C20H25Cl3N2O4S (494.0601)
0.11 (100%) Posidonia oceanica
[PO:0005417] phloem

Found 2 Sample Hits
Metabolite Species Sample
Cefmenoxime

Formula: C16H17N9O5S3 (511.0515)
Adducts: [M+H-H2O]+ (Ppm: 1.8)
Mus musculus (Urinary bladder)
HR2MSI_mouse_urinary_bladder - S096
Resolution: 10μm, 260x134

Description

Mass spectrometry imaging of phospholipids in mouse urinary bladder (imzML dataset)
The spatial distribution of phospholipids in a tissue section of mouse urinary bladder was analyzed by MALDI MS imaging at 10 micrometer pixel size with high mass resolution (using an LTQ Orbitrap mass spectrometer).

R, ö, mpp A, Guenther S, Schober Y, Schulz O, Takats Z, Kummer W, Spengler B, Histology by mass spectrometry: label-free tissue characterization obtained from high-accuracy bioanalytical imaging. Angew Chem Int Ed Engl, 49(22):3834-8(2010)

Fig. S2: Single ion images of compounds shown in Fig. 1A-B : (upper left to lower right) m/z = 743.5482 (unknown), m/z = 741.5307 (SM (16:0), [M+K]+), m/z = 798.5410 (PC (34:1), [M+K]+), m/z = 616.1767 (heme b, M+), m/z = 772.5253 (PC (32:0), [M+K]+).

Stability of determined mass values was in the range of +/- 1 ppm over 22 hours of measurement (Fig. S4), with a standard deviation of 0.56 ppm. Accuracy data were obtained during tissue scanning experiments by monitoring the mass signal at nominal mass 798. The internal lock mass function of the Orbitrap instrument was used for automatic calibration during imaging measurements, using the known matrix-related ion signals at m/z = 137.0233, m/z = 444.0925 and m/z = 716.1246.

2-[9-hydroxy-4,6-dimethyl-7-oxo-9-(3,4,5-trichloro-1h-pyrrol-2-yl)non-8-en-2-yl]-4-methyl-5h-1,3-thiazole-4-carboxylic acid

Formula: C20H25Cl3N2O4S (494.0601)
Adducts: [M]+ (Ppm: 6.1)
Posidonia oceanica (root)
20190822_MS1_A19r-19
Resolution: 17μm, 303x309

Description

Seagrasses are among the most efficient sinks of carbon dioxide on Earth. While carbon sequestration in terrestrial plants is linked to the microorganisms living in their soils, the interactions of seagrasses with their rhizospheres are poorly understood. Here, we show that the seagrass, Posidonia oceanica excretes sugars, mainly sucrose, into its rhizosphere. These sugars accumulate to µM concentrations—nearly 80 times higher than previously observed in marine environments. This finding is unexpected as sugars are readily consumed by microorganisms. Our experiments indicated that under low oxygen conditions, phenolic compounds from P. oceanica inhibited microbial consumption of sucrose. Analyses of the rhizosphere community revealed that many microbes had the genes for degrading sucrose but these were only expressed by a few taxa that also expressed genes for degrading phenolics. Given that we observed high sucrose concentrations underneath three other species of marine plants, we predict that the presence of plant-produced phenolics under low oxygen conditions allows the accumulation of labile molecules across aquatic rhizospheres.