在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 13 Reference Ions Near m/z 402.9598
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000039233 Unreliable 402.9597 402.9595 ~ 402.9598
MzDiff: 0.9 ppm
[(1r,2r,3s,4s,5r,6r)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid (BioDeep_00002059319)
Formula: C6H15O15P3 (419.9624)
0.86 (100%) Posidonia oceanica
[PO:0005059] root endodermis
MSI_000001324 Unavailable 402.9629 402.9629 ~ 402.9629
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
-0.58 (100%) Mus musculus
[UBERON:0001224] renal pelvis
MSI_000001817 Unavailable 402.9629 402.9629 ~ 402.9629
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
-0.62 (100%) Mus musculus
[UBERON:0001225] cortex of kidney
MSI_000002246 Unavailable 402.9629 402.9629 ~ 402.9629
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
-0.59 (100%) Mus musculus
[UBERON:0001293] outer medulla of kidney
MSI_000003011 Unavailable 402.9673 402.9673 ~ 402.9673
MzDiff: none
Not Annotated -0.88 (0%) Rattus norvegicus
[UBERON:0001950] neocortex
MSI_000003658 Unavailable 402.9673 402.9673 ~ 402.9673
MzDiff: none
Not Annotated -0.87 (0%) Rattus norvegicus
[UBERON:0002037] cerebellum
MSI_000005070 Unavailable 402.9673 402.9673 ~ 402.9673
MzDiff: none
Not Annotated -0.47 (0%) Rattus norvegicus
[UBERON:0002298] brainstem
MSI_000005485 Unreliable 402.9673 402.9673 ~ 402.9673
MzDiff: none
Not Annotated 2.12 (0%) Rattus norvegicus
[UBERON:0002435] striatum
MSI_000013589 Unreliable 402.9592 402.9592 ~ 402.9592
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
0.67 (100%) Plant
[PO:0005417] phloem
MSI_000014561 Unreliable 402.9592 402.9592 ~ 402.9592
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
0.56 (100%) Plant
[PO:0006036] root epidermis
MSI_000019215 Unavailable 402.9592 402.9592 ~ 402.9592
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
-1.15 (100%) Plant
[PO:0020124] root stele
MSI_000019334 Unreliable 402.9592 402.9592 ~ 402.9592
MzDiff: none
myo-Inositol 1,4,5-trisphosphate (BioDeep_00000014427)
Formula: C6H15O15P3 (419.9624)
0.94 (100%) Plant
[PO:0025197] stele
MSI_000032896 Unavailable 402.9588 402.9588 ~ 402.9588
MzDiff: none
[(1r,2r,3s,4s,5r,6r)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid (BioDeep_00002059319)
Formula: C6H15O15P3 (419.9624)
-0 (100%) Posidonia oceanica
[PO:0005020] vascular bundle

Found 11 Sample Hits
Metabolite Species Sample
myo-Inositol 1,4,5-trisphosphate

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 9.4)
Mus musculus (Kidney)
FULL_MS_centriod_CHCA_20210819
Resolution: 17μm, 638x437

Description

AP-MALDI instrument demo test, mass spectrum scan in centroid mode.

myo-Inositol 1,4,5-trisphosphate

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 0.3)
Plant (Root)
MPIMM_035_QE_P_PO_6pm
Resolution: 30μm, 165x170

Description

5-phospho-alpha-D-ribose 1-diphosphate

Formula: C5H8O14P3 (384.9127)
Adducts: [M+NH4]+ (Ppm: 5.7)
Mus musculus (Lung)
image4
Resolution: 40μm, 162x156

Description

Fig 6c Fig. 6 MALDI-MSI of U13C-PC16:0/16:0 acyl chain remodeling. A: Averaged MALDI mass spectrum from lung tissue collected from mice euthanized 12 h after administration of D9-choline and U13C-DPPC–containing Poractant alfa surfactant. The ion at m/z 828.6321 is assigned as the [M+Na]+ ion of 13C24-PC16:0_20:4 formed by acyl remodeling of U13C-PC16:0/16:0. The “NL” value refers to the intensity of the base peak in the full range MS1 spectrum. B: MS/MS spectrum of precursor ions at m/z 828.5 ± 0.5 with fragment ions originating from [13C24-PC16:0_20:4+Na]+ annotated. Part-per-million (ppm) mass errors are provided in parentheses. C, D: MALDI-MSI data of [U13C-DPPC+Na]+ (blue), [PC36:4+Na]+ (green) and [13C24-PC16:0_20:4+Na]+ (red) in lung tissue collected from mice (C) 12 h and (D) 18 h after label administration. All images were visualized using total-ion-current normalization and hotspot removal (high quantile = 99%). MS/MS, tandem mass spectrometry; MSI, mass spectrometry imaging; PC, phosphatidylcholine; U13C-DPPC, universally 13C-labeled dipalmitoyl PC.

5-phospho-alpha-D-ribose 1-diphosphate

Formula: C5H8O14P3 (384.9127)
Adducts: [M+NH4]+ (Ppm: 6.9)
Mus musculus (Lung)
image5
Resolution: 40μm, 163x183

Description

Supplementary Figure S8. MALDI-MSI data of mouse lung tissue administered with D9-choline and U 13C-DPPC–containing Poractant alfa surfactant (labels administered 18 h prior to sacrifice). Ion images of (a) m/z 796.6856 ([U13C-DPPC+Na]+), (b) m/z 756.5154 [PC32:0+Na]+ and (c) m/z 765.6079 ([D9-PC32:0+Na]+). (d) Overlay image of [U13C-DPPC+Na]+ (red) and [D9-PC32:0+Na]+ (green). Parts per million (ppm) mass errors are indicated in parentheses. All images were visualised using totalion-current normalisation and using hotspot removal (high quantile = 99%). DPPC = PC16:0/16:0.

5-phospho-alpha-D-ribose 1-diphosphate

Formula: C5H8O14P3 (384.9127)
Adducts: [M+NH4]+ (Ppm: 6.9)
Mus musculus (Lung)
image2
Resolution: 40μm, 550x256

Description

Supplementary Figure S6. Ion distribution images for (a) [PC36:4+Na]+ (m/z 804.5514) and (b) [PC38:6+Na]+ (m/z 828.5515) obtained from mouse lung tissue collected 6 h after administration of D9- choline and U13C-DPPC–containing CHF5633. Parts-per-million (ppm) mass errors are indicated in parentheses. (c) Magnification of the boxed region in (a) with selected bronchiolar regions outlined in white boxes. (d) The corresponding H&E-stained tissue section with the same selected bronchiolar regions outlined in black boxes. These data demonstrate the co-localisation of the polyunsaturated lipids PC36:4 and PC38:6 with the bronchiolar regions of the lung. All MSI images were visualised using total ion current normalisation and hotspot removal (high quantile = 99%).

[(1r,2r,3s,4s,5r,6r)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 0.7)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

[(1r,2r,3s,4s,5r,6r)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 1.8)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

[(1r,2r,3s,4s,5r,6r)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxyphosphonic acid

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 1)
Posidonia oceanica (root)
MS1_20180404_PO_1200
Resolution: 17μm, 193x208

Description

myo-Inositol 1,4,5-trisphosphate

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 1.8)
Mytilus edulis (mantle)
20190201_MS38_Crassostrea_Mantle_350-1500_DHB_pos_A28_10um_270x210
Resolution: 10μm, 270x210

Description

myo-Inositol 1,4,5-trisphosphate

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 0.8)
Mytilus edulis (gill)
20190202_MS38_Crassostrea_Gill_350-1500_DHB_pos_A25_11um_305x210
Resolution: 11μm, 305x210

Description

single cell layer class_4 is the gill structure cells, metabolite ion 534.2956 is the top representive ion of this type of cell

myo-Inositol 1,4,5-trisphosphate

Formula: C6H15O15P3 (419.9624)
Adducts: [M+H-H2O]+ (Ppm: 0.8)
Mytilus edulis (mantle)
20190216_MS38_Mytilus_mantle_350-1500_DHB_pos_A26_10um_275x210
Resolution: 10μm, 275x210

Description