在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 13 Reference Ions Near m/z 310.9889
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000053951 Reliable 310.9953 310.9951 ~ 310.9958
MzDiff: 2.9 ppm
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
3.78 (100%) MALDI - CHCA
[NOVOCELL:BACKGROUND] blank
MSI_000015428 Reliable 310.9953 310.9953 ~ 310.9953
MzDiff: 0.1 ppm
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
4.97 (100%) Vitis vinifera
[PO:0009085] exocarp
MSI_000007471 310.9952 310.9951 ~ 310.9953
MzDiff: 0.9 ppm
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
1.96 (100%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000032531 Unreliable 310.9955 310.9952 ~ 310.9958
MzDiff: 2.7 ppm
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
1.97 (100%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000012987 Unavailable 310.9889 310.9889 ~ 310.9889
MzDiff: none
(2r,3s,4s,5r,6r)-2-(hydroxymethyl)-6-(2,2,2-trichloroethoxy)oxane-3,4,5-triol (BioDeep_00002322276)
Formula: C8H13Cl3O6 (309.9778)
-0.59 (100%) Plant
[PO:0005020] vascular bundle
MSI_000013424 Unreliable 310.996 310.996 ~ 310.996
MzDiff: none
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
1.18 (100%) Plant
[PO:0005417] phloem
MSI_000013870 Unavailable 310.9889 310.9889 ~ 310.9889
MzDiff: none
(2r,3s,4s,5r,6r)-2-(hydroxymethyl)-6-(2,2,2-trichloroethoxy)oxane-3,4,5-triol (BioDeep_00002322276)
Formula: C8H13Cl3O6 (309.9778)
-0.01 (100%) Plant
[PO:0005417] phloem
MSI_000015141 Unavailable 310.9889 310.9889 ~ 310.9889
MzDiff: none
(2r,3s,4s,5r,6r)-2-(hydroxymethyl)-6-(2,2,2-trichloroethoxy)oxane-3,4,5-triol (BioDeep_00002322276)
Formula: C8H13Cl3O6 (309.9778)
-0.59 (100%) Plant
[PO:0006036] root epidermis
MSI_000018548 Unreliable 310.9889 310.9889 ~ 310.9889
MzDiff: none
(2r,3s,4s,5r,6r)-2-(hydroxymethyl)-6-(2,2,2-trichloroethoxy)oxane-3,4,5-triol (BioDeep_00002322276)
Formula: C8H13Cl3O6 (309.9778)
1.73 (100%) Plant
[PO:0020124] root stele
MSI_000018893 Unreliable 310.996 310.996 ~ 310.996
MzDiff: none
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
0.91 (100%) Plant
[PO:0020124] root stele
MSI_000019702 Unavailable 310.996 310.996 ~ 310.996
MzDiff: none
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
-0.22 (100%) Plant
[PO:0025197] stele
MSI_000033691 Unreliable 310.9952 310.9952 ~ 310.9952
MzDiff: none
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
1 (100%) Posidonia oceanica
[PO:0005352] xylem
MSI_000037913 Unavailable 310.9951 310.9951 ~ 310.9951
MzDiff: none
D-ribulose-1,5-bisphosphate (BioDeep_00000003418)
Formula: C5H12O11P2 (309.9855)
-0.06 (100%) Posidonia oceanica
[UBERON:0000329] hair root

Found 12 Sample Hits
Metabolite Species Sample
(2r,3s,4s,5r,6r)-2-(hydroxymethyl)-6-(2,2,2-trichloroethoxy)oxane-3,4,5-triol

Formula: C8H13Cl3O6 (309.9778)
Adducts: [M+H]+ (Ppm: 12.4)
Plant (Root)
MPIMM_035_QE_P_PO_6pm
Resolution: 30μm, 165x170

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 7.5)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_17
Resolution: 17μm, 208x108

Description

1 male adult wild-type rat was obtained from Inserm U1085 - Irset Research Institute (University of Rennes1, France). Animals were age 60 days and were reared under ad-lib conditions. Care and handling of all animals complied with EU directive 2010/63/EU on the protection of animals used for scientific purposes. The whole epididymis was excised from each animal immediately post-mortem, loosely wrapped rapidly in an aluminum foil and a 2.5% (w/v) carboxymethylcellulose (CMC) solution was poured to embed the epididymis to preserve their morphology. To remove air bubbles, the filled aluminum molds was gently freezed by depositing it on isopentane or dry ice, then on the nitrogen vapors and finally by progressively dipping the CMC/sample coated with aluminum foil into liquid nitrogen (or only flush with liquid nitrogen). Frozen tissues were stored at -80 °C until use to avoid degradation.

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 7.5)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_18
Resolution: 17μm, 208x104

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 7.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_43
Resolution: 17μm, 298x106

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 7.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_44
Resolution: 17μm, 299x111

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_46
Resolution: 17μm, 298x106

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_47
Resolution: 17μm, 301x111

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.5)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_48
Resolution: 17μm, 294x107

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_04
Resolution: 17μm, 178x91

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.2)
Rattus norvegicus (normal)
epik_dhb_head_ito01_05
Resolution: 17μm, 183x105

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 8.2)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_14
Resolution: 17μm, 205x103

Description

D-ribulose-1,5-bisphosphate

Formula: C5H12O11P2 (309.9855)
Adducts: [M+H]+ (Ppm: 7.8)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.