在BioDeep NovoCell知识数据库中,参考离子总共被划分为4个级别。
  • Confirmed: 这个参考离子已经通过手动审计得到确认和验证。
  • Reliable: 这个参考离子可能在特定的解剖组织环境中高度保守。
  • Unreliable: 这个参考离子具有较高的排名价值,但缺乏可重复性。
  • Unavailable: 由于排名价值低且缺乏可重复性,这个参考离子不应用于注释。

Found 9 Reference Ions Near m/z 229.938
NovoCell ID m/z Mass Window Metabolite Ranking Anatomy Context
MSI_000015695 Reliable 229.9378 229.9378 ~ 229.9378
MzDiff: 0.1 ppm
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
3.63 (100%) Vitis vinifera
[PO:0009085] exocarp
MSI_000007393 229.9376 229.9374 ~ 229.9379
MzDiff: 2.1 ppm
2,4-Dichloro-6-nitrophenol (BioDeep_00000173546)
Formula: C6H3Cl2NO3 (206.949)
2.17 (100%) Rattus norvegicus
[UBERON:0004359] corpus epididymis
MSI_000032520 Unreliable 229.9378 229.9376 ~ 229.938
MzDiff: 1.4 ppm
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
2.85 (100%) Posidonia oceanica
[PO:0005020] vascular bundle
MSI_000039199 Unreliable 229.9378 229.9377 ~ 229.938
MzDiff: 0.9 ppm
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
0.89 (100%) Posidonia oceanica
[PO:0005059] root endodermis
MSI_000013507 Unreliable 229.9382 229.9382 ~ 229.9382
MzDiff: none
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
0.94 (100%) Plant
[PO:0005417] phloem
MSI_000014612 Unreliable 229.9382 229.9382 ~ 229.9382
MzDiff: none
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
0.29 (100%) Plant
[PO:0006036] root epidermis
MSI_000019100 Unavailable 229.9382 229.9382 ~ 229.9382
MzDiff: none
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
-0.86 (100%) Plant
[PO:0020124] root stele
MSI_000019355 Unreliable 229.9382 229.9382 ~ 229.9382
MzDiff: none
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
0.87 (100%) Plant
[PO:0025197] stele
MSI_000035732 Unavailable 229.9376 229.9376 ~ 229.9376
MzDiff: none
6-bromo-3-chloro-1H-indole (BioDeep_00000328115)
Formula: C8H5BrClN (228.9294)
-0.32 (100%) Posidonia oceanica
[PO:0006203] pericycle

Found 21 Sample Hits
Metabolite Species Sample
6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 6.7)
Plant (Root)
MPIMM_035_QE_P_PO_6pm
Resolution: 30μm, 165x170

Description

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.9)
Vitis vinifera (Fruit)
grape_dhb_91_1
Resolution: 50μm, 120x114

Description

Grape berries fruit, condition: Ripe

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_17
Resolution: 17μm, 208x108

Description

1 male adult wild-type rat was obtained from Inserm U1085 - Irset Research Institute (University of Rennes1, France). Animals were age 60 days and were reared under ad-lib conditions. Care and handling of all animals complied with EU directive 2010/63/EU on the protection of animals used for scientific purposes. The whole epididymis was excised from each animal immediately post-mortem, loosely wrapped rapidly in an aluminum foil and a 2.5% (w/v) carboxymethylcellulose (CMC) solution was poured to embed the epididymis to preserve their morphology. To remove air bubbles, the filled aluminum molds was gently freezed by depositing it on isopentane or dry ice, then on the nitrogen vapors and finally by progressively dipping the CMC/sample coated with aluminum foil into liquid nitrogen (or only flush with liquid nitrogen). Frozen tissues were stored at -80 °C until use to avoid degradation.

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 2.3)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_18
Resolution: 17μm, 208x104

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 3.6)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_43
Resolution: 17μm, 298x106

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 3.6)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_44
Resolution: 17μm, 299x111

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.4)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_46
Resolution: 17μm, 298x106

Description

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.9)
Vitis vinifera (Fruit)
grape_dhb_164_1
Resolution: 17μm, 136x122

Description

Grape berries fruit, condition: Late

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.9)
Vitis vinifera (Fruit)
grape_dhb_163_1
Resolution: 17μm, 132x115

Description

Grape berries fruit, condition: Late

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 2.7)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_47
Resolution: 17μm, 301x111

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 2.7)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito08_48
Resolution: 17μm, 294x107

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.4)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_04
Resolution: 17μm, 178x91

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_03
Resolution: 17μm, 159x110

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 3.1)
Rattus norvegicus (normal)
epik_dhb_head_ito01_05
Resolution: 17μm, 183x105

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.8)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito01_06
Resolution: 17μm, 183x103

Description

2,4-Dichloro-6-nitrophenol

Formula: C6H3Cl2NO3 (206.949)
Adducts: [M+Na]+ (Ppm: 1.4)
Rattus norvegicus (Epididymis)
epik_dhb_head_ito03_14
Resolution: 17μm, 205x103

Description

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.1)
Posidonia oceanica (root)
20190614_MS1_A19r-20
Resolution: 17μm, 262x276

Description

Seagrasses are one of the most efficient natural sinks of carbon dioxide (CO2) on Earth. Despite covering less than 0.1% of coastal regions, they have the capacity to bury up to 10% of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. On land, the soil’s ability to sequestrate carbon is intimately linked to microbial metabolism. Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. Here, we show that seagrasses excrete organic sugars, namely in the form of sucrose, into their rhizospheres. Surprisingly, the microbial communities living underneath meadows do not fully use this sugar stock in their metabolism. Instead, sucrose piles up in the sediments to mM concentrations underneath multiple types of seagrass meadows. Sediment incubation experiments show that microbial communities living underneath a meadow use sucrose at low metabolic rates. Our metagenomic analyses revealed that the distinct community of microorganisms occurring underneath meadows is limited in their ability to degrade simple sugars, which allows these compounds to persist in the environment over relatively long periods of time. Our findings reveal how seagrasses form blue carbon stocks despite the relatively small area they occupy. Unfortunately, anthropogenic disturbances are threatening the long-term persistence of seagrass meadows. Given that these sediments contain a large stock of sugars that heterotopic bacteria can degrade, it is even more important to protect these ecosystems from degradation.

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.5)
Posidonia oceanica (root)
20190822_MS1_A19r-19
Resolution: 17μm, 303x309

Description

Seagrasses are among the most efficient sinks of carbon dioxide on Earth. While carbon sequestration in terrestrial plants is linked to the microorganisms living in their soils, the interactions of seagrasses with their rhizospheres are poorly understood. Here, we show that the seagrass, Posidonia oceanica excretes sugars, mainly sucrose, into its rhizosphere. These sugars accumulate to µM concentrations—nearly 80 times higher than previously observed in marine environments. This finding is unexpected as sugars are readily consumed by microorganisms. Our experiments indicated that under low oxygen conditions, phenolic compounds from P. oceanica inhibited microbial consumption of sucrose. Analyses of the rhizosphere community revealed that many microbes had the genes for degrading sucrose but these were only expressed by a few taxa that also expressed genes for degrading phenolics. Given that we observed high sucrose concentrations underneath three other species of marine plants, we predict that the presence of plant-produced phenolics under low oxygen conditions allows the accumulation of labile molecules across aquatic rhizospheres.

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 5.8)
Posidonia oceanica (root)
20190613_MS1_A19r-18
Resolution: 17μm, 246x264

Description

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 3.6)
Posidonia oceanica (root)
20190828_MS1_A19r-22
Resolution: 17μm, 292x279

Description

6-bromo-3-chloro-1H-indole

Formula: C8H5BrClN (228.9294)
Adducts: [M+H]+ (Ppm: 4.5)
Posidonia oceanica (root)
MS1_20180404_PO_1200
Resolution: 17μm, 193x208

Description